FMO06232.5prime Sequence
1152 bp (1004 high quality bases) assembled on 2008-09-15
> FMO06232.5prime
CAGTCGACATGTTCGGATTCGACGGCGAGTACCGCCGCAGGCCTGTGCAA
AGTCTGGGCGGAGCCTCGCACACCTGCGACCGGGACACTGTGATCCGGAA
GGCGGCCCTGGAGCGCCAGAAGCGCAACGAGCTGCGCCAGAAGGAGAACG
GGGCAGTGGTCCTGCAGTCTTACGCCCGCTCATTCATCCACCGCCAGCGG
CGCAAGCGGGCGGAACGGGAAGTTTTCGACATCTACCTAATGGGCCACAA
GGATGGCATCGTGGAGGACGAGAGCCTTACCTTCCTCTTGCGGCGCCTCA
ACTTCTTCTACAGCATCCGGGAGGCCAAGGACAGCGAGCGACTGATCGAA
GTTTGTCAGCAGATCCTTCGCCAGCCCGCTCGTCTGCTTCAGCATTCCTC
CCCTGACTCATTGTGGCTTCTGAGACTGTGCAAGCTGCTGGACACTTGCC
TGCTACAGCTTAGCCTGTCGCACACGGCCCAAGCCATTCCCCTACGCATG
CTGGAAACATTTACCACCGTATCCTCTGTCCAGCAATATATGAAGGATGA
GGCTGTGTTGTTTCAGTATATGGAGCGCGTCTTTGGCTTCCTGATTGCCC
GCAATTACTTTGTGCGGCTGCGACGGCTGCTGGACGACAAGTGTCCGCCG
CTGGACGGAGAGACCCTGCATGCCCCGAGTCCGCTGGCTGAGGCACTGCT
TCAGTTGTTGCTACGTCCCCTGGAAGTTGCCAAAAGGGCATCCGCGGGCG
GCCAGATGTCCTCTATGTCGATGGCGGTTTGCCGGAACTTCACTCGAGAC
ATCTTGGCCACGCCGCACACGGGATCCTCTGCGATACTTTGTGCTACCCT
GCTTTGCCCTGAATGTGGACTTCCATTTGACTTGTTAATGCGTTCGCTCT
ACGACGCACTTGAGTCAGCTGGACCAGCAAATTCGACAGCACGTCCAGCC
GGCGCAGCTTTCTCTTTCTACGGTGTAGAAACAGGCCACAAGACTACCCG
GATGGACTCGATTTTCTCGTCGTTTCTGCCTCACCTCCCTCATGGCTCTC
CGTCGAAGGCAAGTGCCACCCTGCATAGAACCCGCTGCTATTGATCTACT
TCCCGCCCTCTATTGCCGAAATGTATGCCCACATCTGCACCTGCCCAAGT
CA
FMO06232.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3356-RA | 3956 | CG3356-RA | 277..1420 | 8..1152 | 5235 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24198495..24199212 | 344..1062 | 3235 | 98.2 | Plus |
| 2R | 25286936 | 2R | 24198100..24198436 | 8..344 | 1685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:51:52 has no hits.
FMO06232.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:45 Download gff for
FMO06232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3356-RA | 271..1419 | 1..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:46 Download gff for
FMO06232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3356-RA | 213..1361 | 1..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:14 Download gff for
FMO06232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3356-RA | 271..1419 | 1..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:14 Download gff for
FMO06232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24198094..24198436 | 1..344 | 99 | -> | Plus |
| 2R | 24198496..24199216 | 345..1065 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:45 Download gff for
FMO06232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20085617..20085959 | 1..344 | 99 | -> | Plus |
| arm_2R | 20086019..20086739 | 345..1065 | 97 | -> | Plus |
