FMO06233.5prime Sequence
1146 bp (1055 high quality bases) assembled on 2008-09-15
> FMO06233.5prime
CAGTCGACATGTCCCAGCAACATGAGGCAACAGCGGCGGCCGCGGAGAAG
CCGCTAAATAACGGCTACCTGCAGGCGAATGCGCCGCTGGAGGAGCTGAG
TGCCACGGTGGTGTCGCCACTCCTGGGACAGCAACAGGTGCAGCACCAGG
CGCCACATCAGATGCAGCAGCAACAGCAGCAGCAGCAGCAGAACAAGCTG
CCCACTGTCGTTTTCCTGGCGCCCGACGGCAGCGGAGGCGTGGGAATCCA
GCGAGGAAATCCAGCGCAGGGCAATCCCGGCATGGTAACGGGCACCGGCA
GCCACAGCGACTGGCTGCTCAAGGAGTCGCAGCAGCGGCGCCGCCTGCTC
GTCCTGGCCATCGCCTTTACCGTTCTGGGCGCGGCCATCGGGGCACTGGC
CATCTACTTCGCCAGCGTCCATCAGCGTTGCCATCTGTATCGCCTGGAGC
CAGACAACGATGACAGACCGAACGGCAGGTGGAACCAGGATTCGGGATCC
GCCCACGAGGGGCAGGATAACATTTGCATGACCCAGGAGTGCGTGAGAAC
AGCCGCCTCCCTGCTCTCGGCCATGGACCTCAACTCCGATCCCTGCGAGG
ACTTTTTCCAGTACGCGTGCGGCACCTGGAACAAGATGCATCCCATTCCC
GAGGACCGCAGCTCCATCAGCACGTTTGAGGTCCTGTCCGATCAGCAGCA
GGTTATCCTGCGCGCAGTTCTGGAGGAACCCATCGATGAACGCGACAACA
AAGCCACCATAAAGGCCAAAACCTTCTTCAAGAGCTGCATGGATATTCCT
CAAATCCGCAAAATCGGAACGGGTCGACTCAAGCAGGTACTGCAATCCCT
GGGCGGCTGGCCGGTCATCGAGCGGAACTGGAGTCCGCCGGCGGATCTCT
CCGTGGAGCGGCTAATGGGTCAGCTCCGACTGAACTACAGCGAGCCGGTG
ATGATCGAGCTGTACGTGGGCGCCGACGACAAGAACAGCTCGGTGAACAC
CTGCAGATGGACCAGCTGCAGTATGCCCTGCCCTCGAGGGACTACTACTT
GAAGGAAAGCATGCGACGACGGAAGGGCCTACCATCGTAATTGAACACAG
GTGGCGCTGCTCTGAGACGATCGCACCGCCGCCGCGGACTGAGAAG
FMO06233.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nep1-RD | 4026 | CG5905-RD | 1105..2243 | 9..1138 | 5315 | 98.3 | Plus |
| Nep1-RC | 3557 | CG5905-RC | 636..1774 | 9..1138 | 5315 | 98.3 | Plus |
| Nep1-RA | 3368 | CG5905-RA | 447..1585 | 9..1138 | 5315 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6096209..6096653 | 9..453 | 2210 | 99.8 | Plus |
| X | 23542271 | X | 6101653..6101969 | 799..1112 | 1315 | 96.5 | Plus |
| X | 23542271 | X | 6101236..6101368 | 550..682 | 650 | 99.2 | Plus |
| X | 23542271 | X | 6101437..6101556 | 679..798 | 600 | 100 | Plus |
| X | 23542271 | X | 6099578..6099679 | 451..552 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:05:23 has no hits.
FMO06233.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:06 Download gff for
FMO06233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep1-RA | 438..1592 | 1..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:47 Download gff for
FMO06233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep1-RA | 438..1592 | 1..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:05 Download gff for
FMO06233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep1-RA | 438..1592 | 1..1146 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:05 Download gff for
FMO06233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6096200..6096653 | 1..453 | 98 | -> | Plus |
| X | 6099581..6099679 | 454..552 | 100 | -> | Plus |
| X | 6101239..6101366 | 553..680 | 99 | -> | Plus |
| X | 6101439..6101556 | 681..798 | 100 | -> | Plus |
| X | 6101653..6102008 | 799..1146 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:06 Download gff for
FMO06233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5990233..5990686 | 1..453 | 98 | -> | Plus |
| arm_X | 5993614..5993712 | 454..552 | 100 | -> | Plus |
| arm_X | 5995272..5995399 | 553..680 | 99 | -> | Plus |
| arm_X | 5995472..5995589 | 681..798 | 100 | -> | Plus |
| arm_X | 5995686..5996041 | 799..1146 | 94 | | Plus |
