FMO06234.5prime Sequence
1136 bp (1012 high quality bases) assembled on 2008-09-15
> FMO06234.5prime
CAGTCGACATGAACCAATGTCGTCTGAGGAGCCTGGCGCGGATCAGGAGG
AGCCTGACACTGGGTTTGCGGGGAACTGACCAACACGTCCTCGCCCGTCA
AGCCCTCCGCACCATTCAAACGACCTCACAGCGGCGAGGTGTCCATGATC
TGGACTCCTTCGCCAATGGATGCAGTGCCGCCTACATCGAGGGACTCTAC
AACAAGTGGAAGCGCAATCCCAGTTCCGTAGATGAGTCCTGGAACGAGCT
CTTCAGCAGCAACGATTGGTCCAGCCCCAAGAGAAGTCCTCTTCAGGTTT
CGCACTCCCGGAAGTACAGACGTCCTCCGGTTGAAAGGATAGCTGTGAAG
GCTCGGTCGGGCGAAAGGACGGCTTCCGGTGGCGCATCTGCAGCTCCAGC
CGCACCTCCCAGCGACTGGAAGAACATTGATGACCACCACGTGATCCAGG
CCATCATCCGTGCCTATCAATCGCGCGGTCACTTGGCCGCCGATCTGGAT
CCCTTGGGTATTGTTGGTCCGAAGAAGCGTACGTCGGTGGATGGCACCCA
GCGACATGCCGCCAGGGAGGTGCTCCGCCAGCACTTCTCCTATATATTTA
ATGACCTCAATACCGTGTTCAAGTTGCCCTCATCCACAATGATAGGCGGT
GATCAGGAATTTCTGTCACTAAAAGAGATCCTGGATCGCTTGGAGCGCAT
CTATTGCGGCCACATTGGAGTGGAGTACATGCAGATCACGTCGTTGACAA
AGACCAACTGGCTTCGCGACCGTTTCGAGAAGCCTGGAGGCCTGGACTTG
ACCAAGGAGGAAAAGAAGCTCATCCTAGAGCGTCTCACTCGCTCGACGGG
ATTCGAAAACTTCCTGGCGAAAAGTTCCTCGTCGGAGAAGCGTTTCGGAC
TGGAGGGATGCGACATTATGATACCCGCTATAAAGGAGGTGGTTGACCGG
GCCACGGACATGGCGTGAGTCATTTTAATAGAATGGCGCATCGAGGGCGC
CTTCATGTCCTCGCCAACATCTGTCGCAAGCCATTTCGGACTCTGTCTCA
GTTCCCGCTGCAGCAACGAATTCGGATCTGGGAGTAGTACATCTGGGCTG
TTCAGAGACGCTCACCGAACAGACATCCATGTGGCA
FMO06234.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33791-RF | 5540 | CG33791-RF | 1759..2814 | 7..1055 | 5030 | 99 | Plus |
| CG33791-RE | 3895 | CG33791-RE | 114..1169 | 7..1055 | 5030 | 99 | Plus |
| CG33791-RC | 5531 | CG33791-RC | 1759..2814 | 7..1055 | 5030 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1605157..1605522 | 235..600 | 1830 | 100 | Plus |
| 3L | 28110227 | 3L | 1605721..1606006 | 674..959 | 1385 | 99 | Plus |
| 3L | 28110227 | 3L | 1604827..1605056 | 7..236 | 1150 | 100 | Plus |
| 3L | 28110227 | 3L | 1605589..1605661 | 601..673 | 365 | 100 | Plus |
| 3L | 28110227 | 3L | 1606086..1606137 | 981..1032 | 230 | 96.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:05:08 has no hits.
FMO06234.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:03 Download gff for
FMO06234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33791-RF | 1754..2830 | 1..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:33 Download gff for
FMO06234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33791-RD | 109..1185 | 1..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:59 Download gff for
FMO06234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33791-RC | 1754..2830 | 1..1067 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:59 Download gff for
FMO06234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1604822..1605056 | 1..236 | 98 | -> | Plus |
| 3L | 1605159..1605522 | 237..600 | 100 | -> | Plus |
| 3L | 1605589..1605661 | 601..673 | 100 | -> | Plus |
| 3L | 1605721..1606031 | 674..980 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:03 Download gff for
FMO06234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1604822..1605056 | 1..236 | 98 | -> | Plus |
| arm_3L | 1605159..1605522 | 237..600 | 100 | -> | Plus |
| arm_3L | 1605589..1605661 | 601..673 | 100 | -> | Plus |
| arm_3L | 1605721..1606031 | 674..980 | 98 | -> | Plus |
