FMO06235.5prime Sequence
1040 bp (1038 high quality bases) assembled on 2008-09-15
> FMO06235.5prime
CAGTCGACATGGCTGAGAGCAATGTACCGCTACGAGATTTCGACGAAGAG
AGCGAAACGGATTCGGAGACCGAATTGCTCATACGCCGCGATGTACCGAG
CGGTAAACAGAACAACAACAACATTAGGGGGCGACGCAAAAGCTCCATGG
GCTACAGCGGCGTCGACGCCGGCGCTGGCAGCTCTGCCGCCGGCGGCGGA
GGCAGCTTTCTGGGCAATCTTTTCGGATCCAACAGTTTTGGCTCTGCCGC
CGGCCAGATACGTTATAGAAATGAGCGGAGTCGCGAGCGCGCCAAACACT
CAAACGGTAGCTACAGCAGCATTTCGAAACTGGCGCAATTAACGCACACG
TCATCGGGCGTCGCGGGGGCGGGATCGATCGGTGGCGGTGGTGGTGGGAG
TGGCAGTGCCACCGGCATTAAAGTAACCACTGGCGATGGCAGTGTAGCGG
CATCTGGAGGATCTGCTGCCACGGGGGATCTCAGCAATGGCGCTACGCAC
AGCACAACCGTCATAGATCCGGAAAATGGCTCATCCACGGTCTTCTACCA
GCACAATCGGCGTAAAAGCAAGAGTCGCAGCATTGGCAACGTCTGCAAGT
TGTGCCTCTGCAGCTGCTGGCGAAAATGGTTCCGGCCACGGGAGCTGAGA
GCCCGCACCGTAAATCTCGGACGGGTCAATACGGAGAAGTTCCCACCGAA
CGAGATCCGGAATCAGAAGTACAACTTCATCACCTTCCTGCCGCTGGTGC
TGTTCGAGCAGTTTCGCTTCTTCCTCAACTTGTACTTCCTGCTGATGGCG
CTGTCGCAGTTCATTCCGGACATCCGGATCGGTTACCCGTACACCTACTG
GGGTCCGCTCGGCTTCGTGCTATGGTCACCATTTGCCGAGAGGCGGTCGA
CGATCTGCGTCGGCATCAGCGGGATCACGAGGTAAACTCGCAGAGTACAA
GAGACTGTCGTCCACCAACATCAGCGGCTACGAATGGTTCCAGCTCCAAG
CTGAGGTCGTGACGTCATATCGTGAAAAGAACCAACCGCT
FMO06235.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31729-RB | 4912 | CG31729-RB | 691..1722 | 9..1032 | 4960 | 99.2 | Plus |
| CG31729-RD | 3999 | CG31729-RD | 1..809 | 232..1032 | 3845 | 99 | Plus |
| CG31729-RC | 3963 | CG31729-RC | 192..621 | 611..1032 | 1950 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13290687..13291291 | 9..613 | 3025 | 100 | Plus |
| 2L | 23513712 | 2L | 13297616..13298013 | 611..1004 | 1790 | 99 | Plus |
Blast to na_te.dros performed 2014-11-28 22:32:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dwil\Mar | 610 | Dwil\Mar MAR 610bp Derived from AF518731. | 484..532 | 747..795 | 110 | 69.4 | Plus |
FMO06235.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:12 Download gff for
FMO06235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31729-RB | 682..1719 | 9..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:35 Download gff for
FMO06235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31729-RB | 682..1719 | 9..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:22 Download gff for
FMO06235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31729-RB | 691..1728 | 9..1039 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:22 Download gff for
FMO06235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13290687..13291291 | 9..613 | 100 | -> | Plus |
| 2L | 13297619..13298051 | 614..1039 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:12 Download gff for
FMO06235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13290687..13291291 | 9..613 | 100 | -> | Plus |
| arm_2L | 13297619..13298051 | 614..1039 | 97 | | Plus |
