FMO06236.5prime Sequence
775 bp (771 high quality bases) assembled on 2008-09-15
> FMO06236.5prime
TCTAGTCATGAACCCGATGACACAGCAACAGGCGCGCCTGGAGGCCTACA
TGGCCTGTGAGCGGTTTAAGGAGGAGTCGCCAATGTGCGCCCAGGTGGGC
CTATTCCTGGCCAGCTCGCCGCAGTCTAACCAGCAAGTGCGACACTTTGG
CCTGCAGCTGATCGAGTACACAATCAAGTACCGATGGAATTGCATTACGC
ACGAGGAGAAGGTGTACATTAAGGACAATGCCATCAAGATGCTGAACGTG
GGCGTGGGCCCGGCGGAGGACCGCTCGCTGCTGCCCACGAAGGACGCGCT
GTCGCGCATCATCGTCGAGATGATCAAGCGCGAGTGGCCGCAGCAGTGGT
CCGACCTGCTGCCGGAGCTAAGCCAGGCCTGCACCAAGGGCGAGGCCCAA
ACGGAGCTGGTGCTTCTGGTCTTCTTGCGACTGGTGGAGGACGTGGCCCT
ATTACAGACAATCGAGTCGAATCAGCGGCGAAAGGACATGTACCAGGCGC
TAAACAACAACATGAACGACATCTTCGAGTTCTTCCTGCGCCTGGTGGAG
CAGCATGTGACTGCGTTCCGCGAGACAACGCGTCTGTGCAACTACACCAA
GGCGAACGCGCACAGCCGTGTCGTCGAGATGGTACTGCTCACGCTGAGCG
GCTTCGTCGAGTGGGTCAGCATCCAGCACATCATGTCCAGCAATGGCAAA
CTGATGCACTTCTTCTGCATCCTGCTCAACGACAAAGCATTCCAAATGCA
ATGCGGCCGAGTGCCTGGCCGCAAA
FMO06236.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ranbp21-RB | 5879 | CG12234-RB | 941..1708 | 1..769 | 3805 | 99.7 | Plus |
| Ranbp21-RA | 5190 | CG12234-RA | 535..1302 | 1..769 | 3805 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19650477..19651244 | 769..1 | 3780 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:05:15 has no hits.
FMO06236.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:04 Download gff for
FMO06236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp21-RA | 462..1231 | 1..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:36 Download gff for
FMO06236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp21-RA | 597..1366 | 1..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:02 Download gff for
FMO06236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp21-RA | 535..1304 | 1..772 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:02 Download gff for
FMO06236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19650475..19651244 | 1..772 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:04 Download gff for
FMO06236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19544508..19545277 | 1..772 | 99 | | Minus |
