FMO06238.5prime Sequence
1136 bp (1019 high quality bases) assembled on 2008-09-15
> FMO06238.5prime
CAGTCGACATGCTGCTGAAGAAGAAGCGCTATATGTTCGACGAGCGAGAC
GACAATAATATTAACTCGCCCGTCGCCGTCGAGCCAAGCAGCAACAACAA
CAAAATGGCCGATACACGCGAAGTGCGCATTGAAGAGCAATTAAAAGTGA
AAATTGGCGAGGCAAAGAATCTGAGCAGTCGCAATGCGGCCAACACTAGC
TGCAGCACACAGGGCACTCGCGATGTCTACTGCACAATTGCGTTGGACCA
GGAGGAGATCTGCCGCACACCCACCATCGAACGCACACTGACGCCGTTCT
TCGGCGAGGAGCACCAGTTCAAGATTCCGCGCCGCTTCCGCTACCTGACC
ATCTATCTGTGGGATCGTGATATGAAGCAGGATAAACCCATTGGCAAGAT
AGCGATCAAGCGGGAGGAGCTGCACATGTACAATCACAAGGATCACTGGT
TCTCATTGAGGCCAGTCGACCAAGACTCCGAGGTTCAGGGCATGGTTAAT
GTGGAGGTGGCATTTACGGAAGCCCAACAGACCCAGTCGCTCTCCGAGGG
CATAGATCTGGGACAGCACACATTGCGGCATCATCAGAACCTGCCACACC
ACAGCCACCAGCAGCGGGCGCATCTAAACGATTACAAGGAGAACAGTGAA
CTGAGTAACATACAGCGGGCATCAGCAGCTGCAGCGAGTTCCTCATCGGC
AGCCATGACACTCAAGACACGAGCGGCCGGTCTATTTGGTCACGTGCATC
ATCCGCCATCGCAGACTCAGCACTTTCCGATCATCAATACCACATCCACG
TCGTCGGATCAGTTGTCCAATTGGAAATCGCATGGGAGATTCGTTGGTGT
GACCATCAAGTACCAGCCTGCGTGGACCTGGCCAAGAAGCAGGGCACGTG
CGATCCATTTGTGGTCTGTACCGCCCACTATAGCACAAGCACAGTGACGG
CGACGAACTAAGCAGCGCAAAAGACCGTGATCCGGAGTTTGACGAGGCCA
TGTACTTTGATCTTCACATCGATGCGATGCGGTAGCACAAATACACTGGA
GGTACAGAGTGCGTTCCCTGGATCATTAGCGAACAGCTTTCTTTACCGTT
GGCCGGTGCGAACTGTGAATGTGTGAGCGTGGGCCG
FMO06238.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RasGAP1-RC | 4841 | CG6721-RC | 474..1563 | 9..1085 | 5060 | 98.4 | Plus |
| RasGAP1-RB | 5434 | CG6721-RB | 474..1563 | 9..1085 | 5060 | 98.4 | Plus |
| RasGAP1-RA | 4841 | CG6721-RA | 474..1563 | 9..1085 | 5060 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9844565..9845440 | 1026..156 | 4055 | 99.1 | Minus |
| 3L | 28110227 | 3L | 9854664..9854812 | 157..9 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:43:49 has no hits.
FMO06238.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:14 Download gff for
FMO06238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RasGAP1-RA | 465..1537 | 1..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:37 Download gff for
FMO06238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gap1-RB | 459..1531 | 1..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:12 Download gff for
FMO06238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RasGAP1-RA | 465..1537 | 1..1062 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:12 Download gff for
FMO06238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9844555..9845439 | 157..1035 | 98 | <- | Minus |
| 3L | 9854665..9854816 | 1..156 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:14 Download gff for
FMO06238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9837655..9838539 | 157..1035 | 98 | <- | Minus |
| arm_3L | 9847765..9847916 | 1..156 | 97 | | Minus |
