FMO06239.5prime Sequence
1141 bp (1028 high quality bases) assembled on 2008-09-15
> FMO06239.5prime
CAGTCGACATGGGAAAGAAAAACCCCAACGCCCGTCACACAGATGCCGCA
ACACCTTTGACCACAGACGACTCCAACTCCTCATCCGTATCTCGGCGCGA
ATCCGCAACGGAATCCAAATCTGCATCCGAATCGGAGTCCTCGCCTCCAA
GGTCGAACACCAAGCAGTCGCGAACGCATAAAAATGTCAAGGCATCCGGA
AAGGCCACTGTTAGTAGCTCCAGTGATTCCGATCAGGCAGTAGCAAACAG
TTCAGCCAACGACGAGGAGAAGGAGCCCGTTTGCAAAATACGCATTGTGC
CGCTGGAGAAACTGCTGGCCAGTCCCAAAACCAAGGAGCGACCTTCGCGC
GGCAGCCAACAAAAGAACGTTACGATCAACGATTCCAGTGACGAAGAGCC
TCTGAAAGGAAGTAAGCTTGTGTTGCCGGCTCGCAAAAGTCGCAACAAGA
ACGCTTCTATTATAGAACTCAGCGACAGCGAGGAAGTCGACGAAGAGGAG
GAGTCATTACTGGTGGCCATTCCTTTGCCCAAAGAGGCACAGCAGACCAA
GCCAGAGAAGAATAGTAGCAAGGCAAGCAAGGAATCGATCGAAAAGCGGC
AGAAGGCGCAGAAAGAAGCTACGACATCATCCGCCAGGGCAATCAGAAGC
GTTAACGGCACACGACGAGGATCCCTGTCCAGCGAAAAGATCGTCTAGAG
CCAGCTCCTCTCGAGCAGAGTCACCGCCGAGGCCAAAACGTTGTGTCGTC
CGCTTGAAGCGAGTCAGTCTGCCCAAAACGAAACCCGCCCAGAAGCCAAA
AAAAATGAGCTCGGATTCGGAAGAGGCGGCCACCACCTCGAAGAAGAGCC
GTCAGAGGCGCTCCAAAAGCGAAGTGAGGCTGATTCAGACTATGAAGCAC
CAGCTGCAGAGGAGGAGGAGGAGGAGGAGAGAAAGTCGTCCGGTGATGAG
GAGAGGCGGCTAACAGCAGCGACAGCGAGGTGATGCCCCAAGGAGCGGCG
TCGAAGAAGAGCGATCGACAGGGCTCCTCGATTGAGCCGAGGGAGAGCAA
AAAGAAGTCGAAACGCATCAGAAGACCTCAAGCGGCGAAGCGATGGTGAT
GCAGATGACAGCAAAGAACAGCGTTAGCCATCGCGATCTCG
FMO06239.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| XNP-RD | 4557 | CG4548-RD | 234..1351 | 9..1108 | 5050 | 97.9 | Plus |
| XNP-RC | 4493 | CG4548-RC | 170..1287 | 9..1108 | 5050 | 97.9 | Plus |
| XNP-RB | 4557 | CG4548-RB | 234..1351 | 9..1108 | 5050 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25481362..25482345 | 991..9 | 4775 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:52:22 has no hits.
FMO06239.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:31 Download gff for
FMO06239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XNP-RA | 170..1153 | 9..991 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:54 Download gff for
FMO06239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XNP-RB | 483..1466 | 9..991 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:59 Download gff for
FMO06239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XNP-RB | 234..1217 | 9..991 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:59 Download gff for
FMO06239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25481362..25482345 | 9..991 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:31 Download gff for
FMO06239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21307084..21308067 | 9..991 | 99 | | Minus |
