FMO06240.5prime Sequence
1154 bp (952 high quality bases) assembled on 2008-09-15
> FMO06240.5prime
CAGTCGACATGAACTCAAACTCCTGCAGTGACAGCAGTAACGAGTCCATG
GTCAATCCACCGCACATACAGATGAACTTTGGCCAGCAGGCGCAGCAGCA
GCAATCGCATCAGCACCAGCAGCAGCAGCAGCAGCAGGAACGTTATGTGT
GGGAGATGCGAACCCGTAGCCCAAATGTGACGCCAGCCAGCACGGTGCTC
AATTCGCCGGATCTCAATGGCGAGCTGTCCTACGTTCCGCTGCAGGGTCT
TTCGCCATCGGGCGGAGGTGTTCAGGGATCCGGCAGCTATGGTTCGAATG
CGGGACGCGATTCTGGCAGCTATTACTACCAGCGACCGCAGTTGCATCAA
ATCCGACTGGGTAGGAGTCCGGGCAGCCAGTTTGAGACACGGGATGTCCT
GCCACAGGGATTGGCCAGCCCCGGCTCACCAACGGATGTGGGCAAGGCGG
ACGGTCAGTGCCTGCGTGATGGTGAGATCGTGGTGTTCGACGACATTGAC
ACAAACTGGATGAACAAGGCATCGAGTGGCCAGCGTCCAGGCAGCAATGA
GGATGTCCTCAAGGTGACCAAAATGATTGGACAGCTGCCAATAGCCGAGT
ACGAGGGTTCACCGCGACGATTTGGAAGTCAACCGAATACAAATACCATT
ACCATGGGTGGTCCTAGAAAACGTCCGCCGGGTTTCCCGCAAAGAGTTTC
GCCCACCACCAGTGTCGCTAATAATGCAACTGCTGCAGCTAAAGCATCCG
TGGGCAACCTTATCGATTTGGTCGACCACGAGGAAGAGCGTTCCGGGACG
CTTCGCGAGAAACACCTACTTTCGACTACCTGTACGAATTCTCAGAGACC
AGAAGGTGCTGGAGAGTTCTTCAGGCAATCCGAGGACGAAAAGCGGTACC
GGATTACACCCCGAAAGTGAGACGATGTCGCTAGCTCCGCCACAAGAGTA
CCCAGCCACGCCCATGGAGCAGCATAATTAGGACAGCGTTGGCGAGAATA
ACCTAAAGATGGAGCCTTCCTGGTTTACCGGTCGCTCTACTAAAAAGCCA
CCAGTGACCAGAATTCCATCGACGCCTACAGAGACTAATTGATTTGGACC
TCCACTTGATTCGATAGCCGAGCACGGCGCATTTGGCGACCGGAACTGGG
AGCA
FMO06240.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X11L-RA | 4500 | CG5675-RA | 205..1348 | 8..1138 | 4885 | 96.5 | Plus |
| X11L-RF | 5288 | CG5675-RF | 205..1351 | 8..1138 | 4870 | 96.4 | Plus |
| X11L-RE | 4485 | CG5675-RE | 205..1351 | 8..1138 | 4870 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17601378..17601918 | 406..937 | 2245 | 97.8 | Plus |
| X | 23542271 | X | 17600905..17601305 | 8..408 | 2005 | 100 | Plus |
| X | 23542271 | X | 17601984..17602095 | 939..1050 | 235 | 88.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:05:18 has no hits.
FMO06240.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:23 Download gff for
FMO06240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X11L-RA | 201..1290 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:56 Download gff for
FMO06240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X11L-RA | 183..1272 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:46 Download gff for
FMO06240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X11L-RA | 201..1290 | 1..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:46 Download gff for
FMO06240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17600901..17601304 | 1..407 | 99 | -> | Plus |
| X | 17601380..17601919 | 408..939 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:23 Download gff for
FMO06240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17494934..17495337 | 1..407 | 99 | -> | Plus |
| arm_X | 17495413..17495952 | 408..939 | 97 | -> | Plus |
