FMO06243.5prime Sequence
1147 bp (960 high quality bases) assembled on 2008-09-15
> FMO06243.5prime
CAGTCGACATGGATCGACGCCTGAGACGCCCGCGTCGCACGGAAGACGTG
TCCAGCGGTCCACTTCTGGCCCAGTCCAAGCAGCCCAGCCTCCTGCCGGT
GACCCGACGTACGGGCTCCGTGACAGCTGCGGGTGCCACCGCCACCGCCA
CCGCCACCGCTGGTCCCGCCACCCGGACACGTGCCTCCCCGTCACGCAAC
AAGGTCGTCGCACCGCCCTCGCCCGATCTTGGCCCGCGCACCCGTCGCTC
CAGCCGGCCGAGGTCGTCGGTGGGTCCGCTGACCGGATCGGGATCTGGTT
CCTCGCTGCCCATCAAGGCCGCCATCAAGGCACGCACACCCATCCCAGAG
GTTTCCGAGGTATCATCGCCTATTCGTTTGTCAACCAGCAATCTGCCCAT
GACATTGACCACCAACACATCCAGCGGCGCACCGAACAAAGCATTTAACA
CAAGCTCCGTGAACAGCGGCAACAGCTTCAGCCGTACCACTACCAGCAGC
ACCACCACAACCACGGAGCGCATCGAGATCCGTGCCGAGGGAGACGGCGA
GGTGGACACGGATTCCATTCGCAAACGCATAACCGAACGACTGCGCAGAT
CGGTGTCGAAGACAATCTCAAATCTAGCTGGAACACCAGTGACAAACACC
GAAGAGGGCAGTCGTTATAGTAGGAGTGTGTCCCGATCCGTCTACGACGA
TGAGAAGTCCTCCAAGCGTAGTTACTCTACGGGTGAAGAGGATATTGATG
AGGAGGATGAATTGGAGGAGGATCAGTTCCGTAGTTTCAATGAAACCGTA
AACTCGGCCACACCGGCGGAAATATCCTGCCGTCAGTTGAAAGGCTCCTA
GAAGAATTTGGCGGGTGGCTAGGCGCCCTTCCTGTTCCTGCTACTTCTGC
CCCACCGCCGTCTACTATTTGACATTGAGCTTGTACGGCCAGAACGCCCT
GTTCAGTTTAAAGCACCTTCAATCTGGGTATACTACTTGATGTTAAACTA
CCCTAACGCCGCACGTTGCTCCAGCCACGATGGCTGGGTGCCTTTGCCGC
CTATTCAAGGTGGTGGTATTTCTGGCTGGTGGCCCTGCATCCAAGGAACG
AAAGTTTACATCCCTACCCCAGAAACCACAAGTTCTTGCCTTGCCAT
FMO06243.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LBR-RC | 2792 | CG17952-RC | 243..1309 | 8..1088 | 4785 | 97.3 | Plus |
| LBR-RA | 2701 | CG17952-RA | 152..1218 | 8..1088 | 4785 | 97.3 | Plus |
| LBR-RB | 2719 | CG17952-RB | 170..1236 | 8..1088 | 4785 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21721856..21722572 | 358..1088 | 2690 | 95.3 | Plus |
| 2R | 25286936 | 2R | 21720976..21721329 | 8..361 | 1770 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7368..7423 | 462..516 | 124 | 71.4 | Plus |
FMO06243.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:59 Download gff for
FMO06243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LBR-RB | 163..1244 | 1..1097 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:59 Download gff for
FMO06243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LBR-RC | 213..1294 | 1..1097 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:07 Download gff for
FMO06243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LBR-RB | 163..1244 | 1..1097 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:07 Download gff for
FMO06243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21720969..21721327 | 1..359 | 98 | -> | Plus |
| 2R | 21721858..21722580 | 360..1097 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:59 Download gff for
FMO06243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17608474..17608832 | 1..359 | 98 | -> | Plus |
| arm_2R | 17609363..17610085 | 360..1097 | 95 | | Plus |
