FMO06248.5prime Sequence
1121 bp (-79 high quality bases) assembled on 2008-09-15
> FMO06248.5prime
AAAACAAAGTTATCAGTCGACATGAGCGTGGACACGTACCCGCCCAGCTC
GGCGCTCTCGTTCCTGGACATGGACGACAACGAGCTGCTTCCGGGAGCGG
ATACTCAACCCACGCAGTACGATTACCGCGACTTTACCATGCCCTCCACC
TCGCAGAGCCAGACCCAGAACGATCAGCTGGAGATTGCCCAACGCTGCTC
TGCCGGAGACTCGCATCCACGACTGGCCAGCATCACCAACGATCTGGCCG
ATCTGCAGTTCGAAGAGGAGGACGACGAGCCTGGCAGCTCGTATGTGAAG
GAGCTGCCGCCGCATGCGTGCAAGTATTGCGGCATCCATGATCCAGCCAC
GGTGGTCATGTGCAACAACTGCCGCAAATGGTTTTGCAACGGTCGTGGAA
GCACTTCCGGTTCGCACATCATCAACCATCTGGTGAGGGCCAAGCATCGC
GAGGTGACGCTCCACGGGGAAGGTCCCCTGGGCGAGACAATCCTGGAGTG
CTACTCCTGTGGTGTGCGCAACGTCTTTGTGCTGGGCTTCATTCCGGCCA
AGGCCGATTCTGTGGTCGTGCTGCTCTGCCGTCAGCCGTGTGCCGCCCAG
AATTCGCTAAAGGATATGAACTGGGACCAGGAACAGTGGAAGCCTCTAAT
TGCAGACCGCTGCTTTTTGGCCTGGCTGGTAAGCAACCCAGCGAACAGGG
ACAGCTGCGAGCTCGCCAAATCTCAGCCGCTCAGATCAACAAGCTGGAGG
AGCTATGGAAGGAGAATATTGAGGCCACGTTTCAGGATCTGGAGAAGCCA
GGCATGACTCGGAGCCAGCACATGTGCTACTCCGCTACGAGGATGGCTAT
CAATACGAGAAGACCTTTGGGCCGCTGGTCCGCCTTGAGGCCGATTACGA
CCAAACTGAAGGAGTCTGCACGCAGGAAACATCGAAGTACGCTGGGACGT
CGCTCACAAAAGACCATTGCCTACTTTACCCTTGCGAAGACCGATCGGAC
TTGAGCTCATGCATGGCGACAGCTGCCCTGCATTATTGTGGCCGACTGTA
CAATCGTGGAGCAGAATCCGCCACGTATTCCAGGGCGGACAATTCGGCGA
TGACCTCGGCCTTGCACCTGA
FMO06248.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Upf1-RB | 4709 | CG1559-RB | 366..1482 | 14..1112 | 4855 | 96.8 | Plus |
| Upf1-RA | 5187 | CG1559-RA | 395..1511 | 14..1112 | 4855 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11903839..11904681 | 1020..190 | 3635 | 97.6 | Minus |
| X | 23542271 | X | 11904744..11904919 | 189..14 | 835 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:52:47 has no hits.
FMO06248.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:13 Download gff for
FMO06248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Upf1-RA | 395..1518 | 14..1120 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:04:51 Download gff for
FMO06248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Upf1-RA | 364..1487 | 14..1120 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:49 Download gff for
FMO06248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Upf1-RA | 395..1518 | 14..1120 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:49 Download gff for
FMO06248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11903734..11904681 | 190..1120 | 96 | <- | Minus |
| X | 11904744..11904919 | 14..189 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:13 Download gff for
FMO06248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11797767..11798714 | 190..1120 | 96 | <- | Minus |
| arm_X | 11798777..11798952 | 14..189 | 98 | | Minus |
