FMO06249.5prime Sequence
1160 bp (1023 high quality bases) assembled on 2008-09-15
> FMO06249.5prime
CAGTCGACATGAGATCGCATGTGGCCGTTTACAGGGCGCCAGAATCAGCA
GCACCACCACCACCGCCGCCCAACTACGCGTCCTTGCGATACCACCAGCA
TCCGTTGAGCCATTGGCCGGGTAGCCAGCATCCAGCTCCTGTGTACAGGT
TGCATCATGGTCCGCCGTCTGCACCACCGCCCAATTGGGCAGCTCAGTCG
GCTGGCCAACCACCTCAACCAGTTGGCTATGGAGTGGTTAATCAGCAGCG
GATCAATGAGTGCGCCGGCATACCGCTCATCTCGAATGCCTCCAGTCACT
TGTCGCCAGCCCAGCGACAGAGATTGCTGAGGAAATCCGCCCTTAAAACA
TGTCCAACTTGGCCACCTGGAGGGGCCACTATGTCCCAGCTGGCTGTGCA
TGCCCAGGGCATGCCGCTGCTCCAGCAGAATGGCAAGCACCATCTCCAGC
AACAGCAGATGCAGCACCACCAGCCACTACATCACCATCATCCTGTGACC
AACAACTGGAGTGGCTACCAGCCGATGAGCAGTCAGCCTGCTTTCAAGTT
GGCTGACAAATCTCGAGCCCTTCGCTATCAGAATTCGGCACCACCGGTGC
TCAGTAGCCAAGAGAAGACGCCTAACAATGCTGCTGGCCAGGATCAGGCC
ACCTCGCCAGCGGAGACCTGTCTGCCGAGGATCATTAAACCCAGGAAGCG
ACGAAAGAAGGATCGAAAACCGGGCAATGGGGTTTTGCTCAAAATTGAGG
CGGATATGCAACCGAAGATGTCCAATCCGCTGGACGGTTACACCGCGAAT
GCGGGAGCATCTTACCATCTACCATCTGGAATATTGCAGCATGATCATAC
GCACGGAGTCTGCTTCTGCCGAGAATGTGACCCACTTCGTTCGCTTTGGG
ATTACCCGCTCCGGCGATCGCTTTCCGATGCCTTCTTCCAGCGAGCCAGG
AGGCGGGAGCCGGAGAGTCCTCCTCCTCACGTCATCCACTCACTCCGGAA
CAGCTCTGCGTAGCTCAATTTGTAGCAAGAGCTGCCCAGCTCATTGGTCC
TGCAGGAGGAGACCACGGAGGAATTCGCCTCCCAATACCGGCGATAGCAG
CCGGCCGAAAAGTGGGAGTATCCGGATCCAGCCGGGATCATCCGAAGCGC
ATGCCAACCT
FMO06249.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17786-RA | 4088 | CG17786-RA | 260..1402 | 9..1151 | 5230 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24217322..24218459 | 1145..9 | 4995 | 97.6 | Minus |
Blast to na_te.dros performed 2014-11-28 22:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2463 | 414..537 | 172 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6825 | 386..510 | 140 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2424 | 436..506 | 139 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6857 | 423..522 | 138 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6809 | 433..518 | 134 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6885 | 423..531 | 133 | 64 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1180 | 417..512 | 127 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2727 | 447..569 | 121 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2738..2832 | 403..492 | 120 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2392 | 436..510 | 116 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6528..6571 | 433..476 | 112 | 72.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1088..1154 | 405..471 | 110 | 62.7 | Plus |
FMO06249.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:33 Download gff for
FMO06249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17786-RA | 256..1387 | 1..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:08 Download gff for
FMO06249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17786-RA | 254..1385 | 1..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:01 Download gff for
FMO06249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17786-RA | 256..1387 | 1..1135 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:01 Download gff for
FMO06249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24217332..24218463 | 1..1135 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:33 Download gff for
FMO06249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20043054..20044185 | 1..1135 | 97 | | Minus |
