FMO06250.5prime Sequence
1153 bp (1026 high quality bases) assembled on 2008-09-15
> FMO06250.5prime
CAGTCGACATGCTCTGCCCGGGGGAAAATGCCTATAATGCAAATGGCCAA
ACGGGTTTCACAGTCAAGGTCGTCGCTTCCGCCCAGCGACGCTCGAAGCC
ACAACCAACAGCGCGAATTCCCAACGCCCACCGCTTACCCAGTTTGTGCA
TCTGGATGATGGTGGCGCTTATGATTATGTCGTCGTCGCTGGACGCCCTG
GTCATTGACAATGATGGAATAGTCGGCAACCAAACTCGGCATCGTCGCTC
GACCTCCGGCGCAGCCAGTTGCATGCAAGATGCACGCTTCTACCGCAACC
CCAACAGGCCGGTCCACAAGATCTGGACGAACAGCGAGTGCGCCAAGTAT
TTCCTCTGCCTCGACGGTGAGGTGTTCGAATTCAAGTGCTCCGAGGGATT
GCTCTTCGATGTGGTGCGTCAGATCTGCGACTTCAAGGCGAATGTGGACA
ATTGCGATGTCAGCGCGGAGACGCCGGCTCCAAAACCACTACTGGAGATG
GCCGACTGTGCGGATGAATACCAGTTGGGCTGCGCCGATGGTACCTGCCT
GCCGCAGGAGTACTTCTGCGATGGTTCGGTAGACTGTCCCGACGGCTCCG
ACGAAGGCTGGTGCGATGTGGAGCACGATCCGAATGCGGCTGGTGCCTGT
GATCCGCGAAAGTGCCATTTGCCGCAGTGCTTCTGCTCGAAGGATGGCAC
CCAGATACCCGGCAGTCTTCCGGCACAGAGTGTTCCGCAGATGATACTGT
TGACCTTCGACGATGCCATCAATCACGATAACTGGGAGCTGTTCTCCAAG
GTTTTGTTCACACAGCACAGGCGAAACCCCAACGGGTGTCCCATTAGGGC
ACATTCTACGTTTCACATCCGTTTACCAACTATCAGTATGTGCAGAAGCT
TTGGAACGTTGGTCACGAGATCGCAGTGCACTCAGTACGCATCGTGCCCA
GAGATGTGGTGGTCCAGATGCACATTGAGGATTGATCGATGGAGATGGTT
GCCAGACGATATAATCATAAGTCGCAGCGGTACGAATGGAGGAGATTCGT
GCATGAGAGTACCCTTTCTTCGCCGTCGCTTGATCGACAGTTCTCATGAT
GAGGAGTTGGCTTCTGTCGATTCACCCATGTTGGCCCGCATTCCAATCTC
TCT
FMO06250.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ChLD3-RA | 2265 | CG17905-RA | 147..1305 | 9..1148 | 5095 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16740571..16741302 | 207..937 | 3595 | 99.7 | Plus |
| 2L | 23513712 | 2L | 16738996..16739194 | 9..207 | 995 | 100 | Plus |
| 2L | 23513712 | 2L | 16741458..16741510 | 1022..1073 | 200 | 96.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:08:36 has no hits.
FMO06250.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:49 Download gff for
FMO06250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ChLD3-RA | 147..1294 | 9..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:09 Download gff for
FMO06250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ChLD3-RA | 145..1292 | 9..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:02 Download gff for
FMO06250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ChLD3-RA | 147..1294 | 9..1136 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:02 Download gff for
FMO06250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16738996..16739194 | 9..207 | 100 | -> | Plus |
| 2L | 16740572..16741304 | 208..938 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:49 Download gff for
FMO06250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16738996..16739194 | 9..207 | 100 | -> | Plus |
| arm_2L | 16740572..16741304 | 208..938 | 99 | -> | Plus |
