FMO06251.5prime Sequence
1151 bp (986 high quality bases) assembled on 2008-09-15
> FMO06251.5prime
CAGTCGACATGCGAGACACGGCAGCCACTAGCGCCCAGCCAGCCATGATT
GTGATGAGCATCTGGTGCAGCAGCCTCAGCCTGAGCAGCCGCAGCCTGGC
CATCGCCCTGGTGATCTGCGTGACTCTGGTCTACTTCTCCTACAGCTTCA
ATGCCTGCCTCCTGGCCAGCATCAGTCGCAGTCTGCAGCAGAGCAACTTA
CGCAATCTACTGGCGCTGACCTCCTCGCCCCGCAACGAGACCAATAACGC
CGCCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGGAACAGCTCATCCA
CCACCGGTGCTCCGCCGGCACAGACGGTTACTAGCAGCCTGGATGGGGCG
CCCAAGTATCAGCTGCTCCGTCAGCAGGGGCTCCGACCATCGCGCCACCT
GCCCGACACGCTCATCATTGGCGTGAAGAAGAGCGGGACGCGGGCGCTGC
TCGAGTTCATCCGCCTGCATCCGGACGTGCGGGCCGCCGGTTCGGAGGTG
CACTTCTTCGACAGGCACTACCAGCGGGGACTACGCTGGTACCGCCACCA
CATGCCGTACACTATCGAGGGCCAGATCACCATGGAGAAGACGCCCAGCT
ACTTCGTCACCAAGGAGGTGCCGCAGCGCGTCTACCACATGAATCCGGCA
ACAAAATTACTGATTGTGGTGCGGGGATCCGGTGACGCGGGCCATCTCCG
ACTACACACAGGCGGCGAGCAAGAAGGCGGACATGAAGCTCTTCGAGCAG
CTGGCCTTCGTCAACGGTAGCTACTCGGTGGTGGACACCAACTGGGGCCC
GGGTAAGATCGGCGTCTATGCACGCTATCTGGAGCGCTGGCTGCTCTACT
TTCCGCTCTCGCAGCTGCTTCTTCATTCAGCGGCGAGCGGCTGATCATGG
ATCCGGCCTACGAGATTGGACGCGTACAGGAACTTCCTCCGGTCTGAAGC
GCGGTGATCACCGAGAAGCACTTCCTACTTCAATGCCACCAAGGGCTTCC
CCTGCCTCTTCAAGTCGAGCACGCTTCACGCCCCCCTGTCTGGGTAAGAC
CAAAGGGCGCAACATCCGCACAAGATTCCGGGCCATCGACGCCCTCGGAG
TTCCACCGTCCTTCAACACAAGTTCTAACAGCTGACGGCATCACCTCGCC
C
FMO06251.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hs3st-B-RB | 2265 | CG7890-RB | 503..1640 | 9..1143 | 5105 | 97.4 | Plus |
| Hs3st-B-RA | 2092 | CG7890-RA | 154..1291 | 9..1143 | 5105 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19249735..19250202 | 188..655 | 2340 | 100 | Plus |
| X | 23542271 | X | 19250754..19251156 | 656..1063 | 1515 | 95.9 | Plus |
| X | 23542271 | X | 19249141..19249323 | 9..191 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:37 has no hits.
FMO06251.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:49 Download gff for
FMO06251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs3st-B-RA | 147..1299 | 1..1151 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:11 Download gff for
FMO06251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs3st-B-RA | 60..1212 | 1..1151 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:49 Download gff for
FMO06251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs3st-B-RA | 147..1299 | 1..1151 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:49 Download gff for
FMO06251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19249134..19249323 | 1..191 | 97 | -> | Plus |
| X | 19249739..19250202 | 192..655 | 100 | -> | Plus |
| X | 19250754..19251252 | 656..1151 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:49 Download gff for
FMO06251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19143167..19143356 | 1..191 | 97 | -> | Plus |
| arm_X | 19143772..19144235 | 192..655 | 100 | -> | Plus |
| arm_X | 19144787..19145285 | 656..1151 | 93 | | Plus |
