Clone FMO06253 Report

Search the DGRC for FMO06253

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:62
Well:53
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9717-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06253.5prime Sequence

1173 bp (1009 high quality bases) assembled on 2008-09-15

> FMO06253.5prime
CAGTCGACATGAGCCAAAGAGCTGACAGCGGTCACACGAATAGTGGCTTC
AATGGTGGATCCGAGGTGTCCTTGGACATACCCACCAACACGCTGTACCA
CACCTCGCGCGACTGCATTGTGCAGGAGGAGCAGGGTCCCGATGAGAGCT
GCCTGGAGGGAACTCAAAGCTGTTGCTCAAACCTCTGGTCCAACATCTTC
AGGAAGAAAACGCTGTACAAGCGATTCCCCATCCTGGTGTGGCTGCCCCA
GTACAAAAAGGATTATATTTTCGGTGACATAGTGGCGGGCATTTCGGTGG
CCCTGACGGTGATACCCCAGGCCCTGGCCTATGCCGGAATAGCAGGACTG
GATCTGCAGTACGGCCTGTACGCCTGCTTCCTGGGCTGCTTCATATACAT
ATTTATTGGGTCCAGTAAGGATGTGCCTATTGGACCTACGGCCATATCAG
CACTGCTGTCCTTTCAAATCGCTGGAGGCAGTTGGCAGATAGCCACCTTG
CTAACCTTCCTCACAGGTCTCATTGAGATCCTGATGGGAGTTTTCCGGCT
GGGATTTCTCATCGATTTCGTTTCTGGTCCCGTGGGAGCGGGATTCACGA
GTGCCGTGTCCTTGATCATCTTCAGCTCCCAGATGAAGGACTTCTTGGGC
ATCAAAACAAGTGGCAACACCTTTCCTGCAAGTGTGGATTAGCATTGTGA
ACGATATACACAACATCAGCTGGCCGGACTTCATCTTGGGAATCGTCTGC
ATTACTCTGCTCCTGAGCCTGAGAGCCCTGGCCAGTTGTACCCTGGGTCC
CAAAGGAGGGAAAAACCACAGCGCAAAAGCTTCTGACCGGCATTTTTCTT
GGACATCGGAACTGCCCGCAATGCCCTGCTGGTCTGTGAAACTGCTGGCC
TGGGGTTCTGGTTTGTTTTGTCACGGCAAGGAGATCTCGTGAAGACAGTT
GGCTTTGTGCCCAAGGGATTGCCCTCCTTTCAGCCACCACCCTTCCACTG
GATGCCGTTGTCCACGAAACCACAAGAGAAGTCCTTCAGAGCCCAATAGC
TTTCTTGGACATGTCAGCACCCTGGGATCTTGGTCATTGGTGTTTCATGA
ATGCCTCTTCTGGAACTATATGGCCGTGGTTCAGCCTTCCCTAATGCAAT
CCACAGATGCCCGCAGACTTGAA

FMO06253.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9717-RA 2679 CG9717-RA 235..1395 9..1166 5010 96.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30585940..30587068 1138..9 4705 96.6 Minus
Blast to na_te.dros performed on 2014-11-28 19:05:40 has no hits.

FMO06253.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:12 Download gff for FMO06253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 227..1321 1..1096 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:14 Download gff for FMO06253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 224..1318 1..1096 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:17 Download gff for FMO06253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 227..1321 1..1096 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:17 Download gff for FMO06253.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30585998..30587074 1..1080 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:12 Download gff for FMO06253.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26411720..26412796 1..1080 97   Minus