FMO06255.5prime Sequence
1160 bp (1048 high quality bases) assembled on 2008-09-15
> FMO06255.5prime
CAGTCGACATGGGATTGAGAAATTCCAAGGAAAAGCAGAGCAATGAAGTG
AAAACTTCGAAGCAAGCACCAAAGGCGCAGGTGAACCCTGAACCCCCAGC
TCCACCCAACAAACCGGAACCCGAGGTGGATCACAGTGATTTGGTGCCCA
AGTGGCTGAATCAAACGCAATTTGAGGAATTACTCGCCGCCGATGTGGAT
CAGTTCTCCAAGATAGTGGGCTTCCGGGTGAAGCCAGCGATGGCACCGGG
AGAAAACTATGCCACTCTAATGCTCAGGATCAGCATAGATGTGGAGCTCA
CTGACAAGAGCACTAAGCTGGTCTCCTTCATGATGAAAGTGCCACACGAT
ACTCCGCAAATGGAACAAATGATGAGCATGGCCAACTTCTTTACCAGCGA
GAACGCAGCCTACACTGAGATTCTACCGAAAATGGAGGAGCTCTATAAGG
CCAAGGGTCTGGACATCAAATTCGCTCCGCGAGCATTCAAACTGGACGCC
ACCAAGGAGCCCAAGGTGGCTAATACGGTGCTGATGCACGATCTCGGTCA
GAATGGTTTCAAAAACATAAACCGACTGGAGTGCCTGAACCTGGAGCAAA
CCAAGTTCGCATTGACCAGACTAGCACAGTTCCATGCAGCGGGAGCGACA
ATGGTCCAGGTGCATGGACCCTATCCCGACATATTCGTAAACGGCGTGAT
GGGAAACAACAAGGAAGCTATTATTGCATTCATGGAGGGCATGTTGGCAT
CCTTTAGAACGTCGTTTATGGCCAATCTGGATAAGTTCAAGAACGGAGAA
GAATATCGGGAGAAGCTTGAAAAGCTCTAGCTGGCCTAACTATGGAGTTC
ATGAAACTTGGTATCGTCGATCCCAACGAGTTTAATGCGCTAAACCATGG
CGATTGCTGGATGAATAATCTTCTGTTCAAGATGAACTCCAGCGGGACTT
GGAGGATATGGTCTTTGTCGATTTCAGAATCCCAAATACGCTCTCCTGCA
ATGAATCTGCTTCTACTTCATCATTCCTCGGTCAAATGATTACAGCTGAA
CATTTGACTTTTTCATCAGCATACCAAGAGCACTGGTTAGCAATTGGCAT
TTGGGAATCACTGGCGAAAGCCATCGCTGAGATGCACCGAACCTTCATCA
ATACGGGGAT
FMO06255.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6830-RA | 2781 | CG6830-RA | 90..1258 | 9..1156 | 5190 | 97.4 | Plus |
| CG6834-RA | 2886 | CG6834-RA | 255..1109 | 139..990 | 1495 | 79.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11683150..11683666 | 819..303 | 2585 | 100 | Minus |
| 3R | 32079331 | 3R | 11683959..11684253 | 303..9 | 1475 | 100 | Minus |
| 3R | 32079331 | 3R | 11682879..11683086 | 1025..820 | 815 | 97.1 | Minus |
| 3R | 32079331 | 3R | 11686915..11687426 | 814..303 | 760 | 76.6 | Minus |
| 3R | 32079331 | 3R | 11687715..11687879 | 303..139 | 630 | 92.1 | Minus |
| 3R | 32079331 | 3R | 11686679..11686803 | 990..868 | 210 | 81.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:52:57 has no hits.
FMO06255.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:20 Download gff for
FMO06255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6830-RA | 90..1243 | 9..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:17 Download gff for
FMO06255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6830-RA | 88..1241 | 9..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:54 Download gff for
FMO06255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6830-RA | 90..1243 | 9..1142 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:54 Download gff for
FMO06255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11682745..11683088 | 819..1142 | 92 | <- | Minus |
| 3R | 11683151..11683665 | 304..818 | 100 | <- | Minus |
| 3R | 11683959..11684253 | 9..303 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:20 Download gff for
FMO06255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7508467..7508810 | 819..1142 | 92 | <- | Minus |
| arm_3R | 7508873..7509387 | 304..818 | 100 | <- | Minus |
| arm_3R | 7509681..7509975 | 9..303 | 100 | | Minus |
