FMO06256.5prime Sequence
1138 bp (1031 high quality bases) assembled on 2008-09-15
> FMO06256.5prime
CAGTCGACATGGTTTATCACCATCACAACCACGAAAGTCGGATAATACAC
TGCAGAAAACAATTAACTTCCTGGCGGAGAAGAAGCCTGCTGCTGACCAT
CATTGTGGTCACAGCCACAGTGGTTTCACTGATTTCACAAGAAGCCGAGG
CCCACAATCAGAATGCACCACCGATTCTATATGTTCGCGAACGCAACTGG
CGTATTTCGGAGACCGAGAAAGTTGGCCAGATAATCGATAGAGTGCGGGC
GGAGGATCCGGATGGCGATGATCTGATATTTGGCATAGAACCGCGATTCA
GTCTGCCTGGTGGTGAAAACGATGCTAGTCCTCCGGAGAAGATACCCTTT
CAAATTGATCGAGAAACGGGAGTGGTAACTCTCAATGAAAGTTTGGCAGG
AAGGGCTGGTCAGAATTTTCTCATCTATATAACTGTCACCGATGGCTCCT
ATACGGCAAAGAATGAGGTTTTCATCAATATCTTGGGCGAGCGGGAGAAT
AGCTCCGGCTATCGACCGCAGACATCAATTTCGAACGTGGTGCACAATAT
ATCGCAATTCCTTCCACGTTTTGACCAGCTGCCCGGTGTTCAATCCATCC
GGAATGGGCTGCCAAACAGCCGACCAGGCGGTTGGTATCCACCGGTGCCC
CAGAACAATATATTCGGTCCGCCGCCATTCGGTAACAACTACCCACCGCC
TCCGCCGAATATTCCCGGCGTGCGGGGAGAGCAGAGTGGAGAAGAGGAGC
AGCCGGATGAGGAGGTGACACCCACAACACCCGTCAGATCAGCTCCACCA
CGCCGAAGAGTCGCACCAAACTGACGCCGATAACTGCCAATAATTCAACG
AGAGTCGAATCCGCAATCCCCGCGGAGACAACGACACCGAGTGGCGGCCA
CCATAATAATAGCTCCAGTCCCATCACAATTTTCTCCCTCAAGTCCGGCA
CATTCCGATTGTGGTCACCGTGGGCGGATCTTTGTCGCATCGCCGTGCTC
TGCGTACCTGTGCCGCGACGCTCTTGCGCATCAGCAGACGCTAAAAAGAC
AGGAAGAGGACTGCAGAAGTCAACAGGCAGCTGACGCAGCTGACGACGCC
GCCCACTCGATGTCATGCCGTGCAGACTGGCCTTCGCA
FMO06256.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cad96Ca-RA | 2939 | CG10244-RA | 210..1261 | 9..1050 | 4950 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25203919..25204518 | 999..404 | 2800 | 99.3 | Minus |
| 3R | 32079331 | 3R | 25204582..25204844 | 405..143 | 1315 | 100 | Minus |
| 3R | 32079331 | 3R | 25206913..25207048 | 144..9 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:58 has no hits.
FMO06256.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:08 Download gff for
FMO06256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cad96Ca-RA | 206..1231 | 1..1024 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:18 Download gff for
FMO06256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cad96Ca-RA | 204..1229 | 1..1024 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:47 Download gff for
FMO06256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cad96Ca-RA | 206..1231 | 1..1024 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:47 Download gff for
FMO06256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25203865..25204517 | 405..1051 | 97 | <- | Minus |
| 3R | 25204583..25204842 | 145..404 | 100 | <- | Minus |
| 3R | 25206913..25207052 | 1..144 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:08 Download gff for
FMO06256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21029587..21030239 | 405..1051 | 97 | <- | Minus |
| arm_3R | 21030305..21030564 | 145..404 | 100 | <- | Minus |
| arm_3R | 21032635..21032774 | 1..144 | 97 | | Minus |
