FMO06257.5prime Sequence
1143 bp (1030 high quality bases) assembled on 2008-09-15
> FMO06257.5prime
CAGTCGACATGCGGTTCAGCGGCTACAATCGTTATCAGTGCTTTTGCTCT
GCTGTTGGATCGCTGCTGCTATTATCCCTATTATCCTTCGCGGTCGGCGC
TGCGCTGACGCGGGCAGATGACGTCGGCAGCGACGCCGACGCCGGCAGCG
CCAGCAGGAAATGGCTGTGCAGCCGGACGGATATCTGCACCGCGGAGGGC
GAGATGGTGGCCGGACTGCAGTACGCGCCGGAGATCTTCGAGAGCCAGCG
GGATTGCCGACTGTCGTGCGGCAAGTACGGAGCCATCTGGCCCATGCCCA
CCGGCAAGGAGTGCACCATATCGCACAGGCGGGTACGATTCGATCCGTGG
AAGGTGCGTTTCCATGTTGTGGCGCCCGGCGAGGCGGCCACCCAGTTTCT
CAGGGAGACGAACCGGCTGTTCGTCTCGAATCTGCTGAAGGAGTGCATAC
GAAACTGCACGCTGGAGACCAGCAAGCAGATTCTGGTCAGATCCACGGTG
GCCAACGAGAGCCTCGTTCTGGACTGGCCCACCGACGAGAGCTACGCCCT
GGTGGTGCGAACCACTGAAACGGCCACCTTTGTGGACATCCAAGCGACGA
CGGTGTACGGTGCACGTCATGCCTTCGAGACGCTGAGCAACCTGGTCACC
GGCAGCCTGTCCAATGGCCTGCTGATGGTCACCACGGCCAACATCACCGA
TCGTCCGGCCTTTTCGCATCGCGGCGTCCTTCTGGATACGGCCCGTAACT
TTGTGCCGCTCAAGTTTATACGCAGCACCTTGGATGCGATGGCGGCCAGT
AAGCTGAATGTGCTCCACTGGGCATGTGGTGGACACGCACAGTTTTCCGC
TGGAGATCACCAGGGTGCCGGAGATGCAGCGTTACGGAGCGTACCCTCAT
CGCAGACGTACTCGCGCCAGGATGCACTGAATCTTGTGAATATGCCCGAC
TGCGGGCATACGGAAACTGATCGAGATCGATGGAACCTCGCATGCGGGCA
ATGGCTGGCATGGGGTCCTGCCGCGGACTGGGCACATGTCCGTGTGCTGA
ATCATCGGCCCTGAGGAAATCTGTGTACAGCCACCGTGGCGCCCACTGAA
ATCCCCTGAACGATCTATGTAACGCATGCTCAAGAGAAACTTC
FMO06257.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hexo2-RA | 2140 | CG1787-RA | 158..1291 | 9..1134 | 5200 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8710572..8711539 | 155..1115 | 4165 | 97.9 | Plus |
| X | 23542271 | X | 8709809..8709958 | 9..158 | 750 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:05:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7964..8012 | 125..173 | 110 | 69.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9408..9456 | 125..173 | 110 | 69.4 | Plus |
FMO06257.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:25 Download gff for
FMO06257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hexo2-RA | 158..1293 | 9..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:19 Download gff for
FMO06257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hexo2-RA | 156..1291 | 9..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:49 Download gff for
FMO06257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hexo2-RA | 158..1293 | 9..1137 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:49 Download gff for
FMO06257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8709809..8709957 | 9..157 | 100 | -> | Plus |
| X | 8710575..8711553 | 158..1129 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:25 Download gff for
FMO06257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8603842..8603990 | 9..157 | 100 | -> | Plus |
| arm_X | 8604608..8605586 | 158..1129 | 97 | <- | Plus |
