FMO06258.5prime Sequence
1161 bp (997 high quality bases) assembled on 2008-09-15
> FMO06258.5prime
CAGTCGACATGTCGGACGACTACAACGAAGATGCCCCCGTGGTGCAGACA
ACACATGGAAAAGTGAGGGGAATCCTGCTTAAGTCCCTATATGACGAACA
GTTTTACGCTTTTGATGGCATCCCCTATGCGGTTCCTCCGCTGGGAACCC
TGCGCTTCAAGGAGCCCCATGACCTTAAACCATGGCACGGGATTCGCGAT
TGCTCCAAGCCGCTCAGCAAGTGCCTGCAAGTGAGCACATTAACCAAGGA
GGTGGAAGGCTCCGAGGATTGCCTTTACCTGAACATATCAGTAAAAACTC
TAAACGGTGATCCCATGCCTGTGATGGTCTACATCCATGGAGGCGCTTTT
AAGGGCGGAGATTCTTCGAGACGCGCCTGGGGTCCCGACTATTTTATGAA
GGAAAACGTTGTGTACATAAGCATTGGTCATCGACTGGGACCCTTAGGTT
TCCTCAGTCTCAATGATCCCGATCTTGAAGTTCCTGGCAATGCTGGATTG
AAAGACGTTATCTTGGCCCTCCGTTGGATCAGGGCAAACGCGGCCAACTT
CAATGGTGACCCCGAGAGAATAACCATCTTTGGTCACAGCTCTGGCAGCA
TGACCGTTCAACTGTTTGCTGGCAAGTCCACAATCAGAAGGACTCTTCCA
TAGGGCCATACTATTGGCAGGATTCTCAATGGAGCTGAATCGCCTGCCCC
AAATGGAGTACCGTCTGGCCAAGCATTTGGGCTACGAGGGAGATAATGTC
GATAGCCAGGTCTTGGAGTTCCTCTTGAAGGCAGATCCGGCTCTAATCGT
CTCTGCGGACTTTTTCACTCCACTGGAGAAGAGACAGGGTCACAATATGC
CCTTCAAGCCCAGCATTGAAAGTTACTCCACGCCCAATGCAGTGCTCCTT
GCCGAGCCTATTGACCTCCAGCGACTCACGTTGGACCATCGTATTCCCAT
CATCTTAGGCGCCAACAGTGGCGAGGGATGTTCGATTTTAGCTTCGTATA
AATGAACCCTCGTGGCTAAAGGAATTTCAATGCACCCGGAGCGGGTGCTG
CCTTGGAACCTGAAAAATCGCTGGTGAATCCTGGACAGCGGCGCAACTGT
GTCTAGCCATGGATCCATCACTCTGCGAGCACGCCTGAGATTGAACTGTA
ATTCACACGGA
FMO06258.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est4-RA | 1749 | CG1082-RA | 59..1180 | 9..1129 | 5165 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7537292..7537940 | 1094..446 | 2755 | 96.6 | Minus |
| 3R | 32079331 | 3R | 7538205..7538485 | 303..23 | 1390 | 99.6 | Minus |
| 3R | 32079331 | 3R | 7537999..7538148 | 449..300 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 7527121..7527470 | 464..831 | 300 | 73.4 | Plus |
| 3R | 32079331 | 3R | 7526464..7526735 | 34..298 | 290 | 74.6 | Plus |
| 3R | 32079331 | 3R | 7526849..7526966 | 324..441 | 215 | 78.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:16:17 has no hits.
FMO06258.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:24 Download gff for
FMO06258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est4-RA | 54..1184 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:36 Download gff for
FMO06258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est4-RA | 30..1160 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:03 Download gff for
FMO06258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est4-RA | 54..1184 | 1..1134 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:03 Download gff for
FMO06258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7537254..7537938 | 448..1134 | 96 | <- | Minus |
| 3R | 7538001..7538148 | 300..447 | 100 | <- | Minus |
| 3R | 7538209..7538485 | 23..299 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:24 Download gff for
FMO06258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3363723..3363870 | 300..447 | 100 | <- | Minus |
| arm_3R | 3363931..3364207 | 23..299 | 100 | <- | Minus |
| arm_3R | 3362976..3363660 | 448..1134 | 96 | <- | Minus |
