FMO06260.5prime Sequence
1163 bp (996 high quality bases) assembled on 2008-09-15
> FMO06260.5prime
CAGTCGACATGTCCGAGCTAAATATGGAGCTGAAAAAACTCAGGGAGCTG
GAACTGAAGACCCAAGGCCTTGCCGCCAGAATACAAACTGCCAAAAGCGG
TGAACAGTTGGACGTCGATCTTGTTCAGCTTCAAATTGAAAATAAGAAGC
TGAAGAACCGCCTGTTTATCCTAAAGAAGTCCATTGCTGAGGAATCAACT
GCCGCCGGCGGCGACGTTTCGAAGCCCAAGGAATCCTCTTCGATCACCGA
ACACCTGGAAAGCGTCTTTCGCCAGGCGATTGCATCAGCTTTCCCGGAAT
TCAGAGATACGCCTGTTATAATTGCACCAGTTAATAGTACGTCTGCGAAA
TTCGGCGACTATCAGTGCAACAATGCCATGGGATTGTCCAAGAAGCTGAA
AGAGAAGGGCATTAATAAAGCACCACGTGATATTGCAACCGAGTTGAAAG
GACACTGCCCAGCATCACCAATCATTGAAAAGCTGGAAATTGCCGGAGCT
GGCTTCGTAAACGTGTTCCTTAGCAAAGATTATGCATCTTTAGCCTTAAG
CAATCTATTGCGTAACGGTGTCAAGCCGCCAGAAGTGATCAAAAAGCGAG
TCCTGGTCGACTTTTCATCGCCCAACATTGCCAAACAGATGCATGTCGGT
CACTTGCGGTCCACGATCATTGGCGAGTCGTTATGCCGCTTGCTGGAGTT
CCTGCAGCACGATGTGATCCGCATCAACCACCTGGGTGACTGGGGAACAC
AGTTTGGCATGCTGATTGCCCATTTGGAAGATCGTTTCCCCAACTACCTA
AATGAAAGCCCTCCGATCAGTGATCTGCAATTGTTCTACAAGGAATCCAA
GAAGCGATTCGATGAAGATGAGGAGTTCAAAAACGTGCCTACAGTCGAGT
GCTTTCATTGCAGAAAGGTGTGCCGAACTCCATTTAGGCGTGGGAGCTAA
TTTGCATTGTGTCGCGAAAGGAGTTCCAAACGATTCTACGACGATTAGAT
ATTAGCGTCAGGAACCGGGGGATCGTTCTACCAATTCACGTATGCTGTCG
TTGTGAATACTTGCGAGGCAAGGTCCTGCTGGAAGTGGATGAAGGACGCG
AGATCATGTGGGCAGACCGATCCAAACCTGGCATATACCTCTGACACTCT
GGAATCGAATGCG
FMO06260.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-arg-RA | 2135 | CG9020-RA | 63..1220 | 7..1161 | 5320 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15843443..15843791 | 526..178 | 1745 | 100 | Minus |
| X | 23542271 | X | 15843055..15843388 | 856..523 | 1655 | 99.7 | Minus |
| X | 23542271 | X | 15842727..15842992 | 1117..856 | 845 | 92.1 | Minus |
| X | 23542271 | X | 15843853..15843982 | 179..50 | 650 | 100 | Minus |
| X | 23542271 | X | 15844039..15844083 | 51..7 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:05:38 has no hits.
FMO06260.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:05 Download gff for
FMO06260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 63..1221 | 7..1163 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:06 Download gff for
FMO06260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 54..1212 | 7..1163 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:04 Download gff for
FMO06260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-arg-RA | 63..1221 | 7..1163 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:04 Download gff for
FMO06260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15842709..15842991 | 857..1135 | 93 | <- | Minus |
| X | 15843055..15843384 | 527..856 | 100 | <- | Minus |
| X | 15843443..15843789 | 180..526 | 100 | <- | Minus |
| X | 15843853..15843981 | 51..179 | 100 | <- | Minus |
| X | 15844040..15844083 | 7..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:05 Download gff for
FMO06260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15736742..15737024 | 857..1135 | 93 | <- | Minus |
| arm_X | 15737088..15737417 | 527..856 | 100 | <- | Minus |
| arm_X | 15737476..15737822 | 180..526 | 100 | <- | Minus |
| arm_X | 15737886..15738014 | 51..179 | 100 | <- | Minus |
| arm_X | 15738073..15738116 | 7..50 | 100 | | Minus |
