FMO06261.5prime Sequence
1102 bp (992 high quality bases) assembled on 2008-09-15
> FMO06261.5prime
CAGTCGACATGTCGGCGGACATCGTCGATATTGGCCACACCGGTTGGATG
CCCTCGGTGCAGAGCCTGAGTATTCTGCTGGTTCCGGGTGCGCTCGTCCT
GGTGATTCTCTACCTGTGCGAGCGCCAGTGCAATGACCTCATGGGTGCCC
CACCGCCGGGTCCCTGGGGCCTGCCCTTTCTGGGTTACCTGCCCTTCCTG
GACGCCCGTGCGCCGCACAAGTCACTCCAGAAGCTGGCCAAGCGGTATGG
TGGAATTTTCGAGCTGAAAATGGGCAGGGTGCCGACCGTAGTCCTCTCGG
ATGCCGCCTTGGTGCGGGATTTCTTTCGGCGCGATGTGATGACTGGCCGT
GCGCCGCTCTACCTCACCCACGGCATCATGGGTGGATTTGGCATCATCTG
CGCCCAGGAGGACATTTGGCGACATGCACGGCGCGAGACTATCGATTGGC
TAAAGGCCTTGGGCATGACCCGTCGGCCGGGGGAACTGCGCGCGCGGCTG
GAGCGGCGCATAGCCCGCGGAGTCGACGAGTGCGTACGGCTTTTCGATAC
TGAGGCAAAGAAGAGCTGTGCGTCGGAAGTGAATCCGCTGCCGGCGCTCC
ATCACTCGCTGGGCAACATAATCAACGACCTGGTCTTCGGGATCACCTAC
AAGCGCGACGACCCCGACTGGCTGTACCTGCAGCGGCTGCAGGAGGAGGG
CGTCAAGCTGATTGGCGTCTCCGGGGTGGTCAACTTTTTGCCCTGGCTGC
GTCACCTGCCCGCCAACGTGCGCAACATCCGCTTCCTGCTGGAGGGCAAG
GCCAAGACGCACGCCATCTACGACCGCATTGTGGAGGCCTGTGGCCAGCG
GCTGAAGGAGAAGCAGAAGTGTTCAGAGCTCAAGGAGCAGAGCGGCTGCA
AAGGCAGCTAGAGAGGAGCAGCTCAGCAGTCAAAGGAAGCGGATCCAGCA
GGAGCAGATGAGGCAGACGAGATGACGAGAGAGCGATGAGAGAACGTACG
AGCGATGCATCTGAGCCCTCTAGCGTCGAGAACCGATCGCAGCTCTTACT
GCACGACAGCTGCCATTGCTGCGATTCTCTGACGGGTGAAACCTCCTGCC
AC
FMO06261.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phm-RB | 2203 | CG6578-RB | 197..1277 | 9..1063 | 4695 | 97.1 | Plus |
| phm-RA | 1997 | CG6578-RA | 197..1277 | 9..1063 | 4695 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18685962..18686344 | 9..391 | 1915 | 100 | Plus |
| X | 23542271 | X | 18686957..18687419 | 539..990 | 1805 | 97.2 | Plus |
| X | 23542271 | X | 18686429..18686578 | 390..539 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:16:27 has no hits.
FMO06261.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:28 Download gff for
FMO06261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phm-RA | 192..1205 | 1..1003 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:25 Download gff for
FMO06261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phm-RA | 189..1202 | 1..1003 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:12 Download gff for
FMO06261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phm-RA | 192..1205 | 1..1003 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:12 Download gff for
FMO06261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18685957..18686343 | 1..390 | 98 | -> | Plus |
| X | 18686430..18686578 | 391..539 | 100 | -> | Plus |
| X | 18686958..18687435 | 540..1003 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:28 Download gff for
FMO06261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18579990..18580376 | 1..390 | 98 | -> | Plus |
| arm_X | 18580463..18580611 | 391..539 | 100 | -> | Plus |
| arm_X | 18580991..18581468 | 540..1003 | 96 | | Plus |
