FMO06262.5prime Sequence
1142 bp (1040 high quality bases) assembled on 2008-09-15
> FMO06262.5prime
CAGTCGACATGTCCACCGAAGCGAGTGTGGCTTCCAAATGGACGCGCCCA
GATGACTTCATCAAACTGCAGCGGCTCAAGCAGAAGAAGAACAAATTGGC
AGCCCGCGTGAGCAACAACAACAATAGGCGGCCAAGACACCAAGTGGATG
AGACGGATAAAAGCAAGCTACTGGAGGCTAAGCTCGCCCAGAAGCGAAAA
AATCCGTTTGCGAAATCCACAGCTGATGCCAAGAAACTGCGCGTTGATCC
GCAACTGGCGGACCTCGAACCAGTGGTCACTGCCTCCTCCTGCTTTGTGC
GGGAAACGCCCACGCGCCCGGCGCCCGCCAAATTCGTGCTCCAGAAGTAC
GACCCGCAGGCCTTTGCCAAGCTCTTCCAGCATCCCCAAATCAACGCTGA
GGACGAGGACGATGCGGAGTTGGCCGCCCGGCAGAAGCACACCGCCCACC
TACCTGTGGACTGGTCCCTGAAGACGCGAGCCCGTTTCTTCTGTCCCACG
GAACTGCCTGCCATCCAACTGAAGACCTCGCAGCTGGCCAGCGGACTCAC
CAGCTTCGTGCGCTGCATGGACCCGCAGCGAACGGAGAGCACGCTGGATA
TCTCGGACGCAACGCGGTTCAACCAATGCAATTACTACTGGCAGCACCCG
CACCTGCCCTGGCTGACGCTCTACCCGCGCACCGCCAAGGAGAACGTGGG
CGTGGTGGTGGGTGAGCGGGAGCGCAAGGCCCTGGCCGAGGAGTGGGACT
TCAGCTTCCGGGGCCTATTTCAGCTGCTGCGTGCCCGCCAGTGCCCGTAC
TTCTACCTGTGTGCCAACACTTTTACGGTGCTGTTCCGAGCTGCCGGAGT
TGGCGGTCGGCCGGAGAGCCACGCCTTGGTCACGCCGTCGACTCGGGGAA
TGCGGCAAGCTCTGCGACAGGAGGGGATCGAGTTCAGCATGCCTCTTAAG
AGCGATAACAGTTGAAACGCGCACGACACAGTTTAACGAGGAGAGCACTA
CCACCTCGCTAGTCAGAAGCGGGCGAAGATGCTCCTCCGCCGCAAGAAGA
TGAGACGACGACAGACTGCCTGGAAGCTTGCGTGATGACGTGACTGCACT
ATCCAGTCTCATTGCAGGAGCACAGCTGCCGAAAGCAAAGAC
FMO06262.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hd-RA | 1927 | CG2669-RA | 136..1255 | 7..1108 | 5135 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5373344..5374175 | 1042..215 | 3965 | 99.3 | Minus |
| 3R | 32079331 | 3R | 5374233..5374390 | 214..57 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 5374450..5374499 | 56..7 | 250 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader2 | 5124 | invader2 INVADER2 5124bp | 639..693 | 70..123 | 119 | 70.9 | Plus |
FMO06262.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:19 Download gff for
FMO06262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hd-RA | 130..1201 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:27 Download gff for
FMO06262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hd-RA | 127..1198 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:51 Download gff for
FMO06262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hd-RA | 130..1201 | 1..1065 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:51 Download gff for
FMO06262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5373318..5374175 | 215..1065 | 98 | <- | Minus |
| 3R | 5374233..5374390 | 57..214 | 100 | <- | Minus |
| 3R | 5374450..5374505 | 1..56 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:19 Download gff for
FMO06262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1199040..1199897 | 215..1065 | 98 | <- | Minus |
| arm_3R | 1199955..1200112 | 57..214 | 100 | <- | Minus |
| arm_3R | 1200172..1200227 | 1..56 | 94 | | Minus |
