FMO06263.5prime Sequence
1126 bp (1002 high quality bases) assembled on 2008-09-15
> FMO06263.5prime
CAGTCGACATGTGCCTGGACATTTGGCGGCACAAGAAGAAGGTGTTGCCG
CTGCTACTGCTAATGGCCATCGGCAGTATTATCTACTATCTATATACCCT
GAAATTGGAGGGGGAGCGTGATGAAAGTGCAACTTCGACAACTTCTCGCT
TGGAGCGTGACATAAGAGATCTGCAAGCGGTCTTCGAGTCGGAGGTCATA
CCGGATCTGGGAGCTTTGGGTCGCCCGGCAAGGGGTAATTGGACTGAGGA
GCAGCTGGAGGCCATCGCCAAAAGTCAGCGGGAAACGGGTTACAATGCTT
GGCTCTCCAAGCGCATCTCACCTGAGCGATCGCTCTACGATATGCGACAT
CGCAGCTGCAAAAAGCTCAAGTACCCGATGGAAAAGCTCCCATCAGTCAG
TGTGGTGATAACGTATCACAATGAGGAGGCAAGCGTGCTGCTTCGAACGC
TTAGCAGCTTGAGGAGCCGAACTCCGATCCAGCTGCTTCGAGAGGTTATC
CTGGTGGACGACGGGAGCACCCAAGCGGACGAGAAGCTCAACGACTTCAT
TAAGATCAAGTTTCTAAATATGGTGCAGCACCGCAGGATCACAACCCAGG
TGGGTCTGATGCATGCGAGAGTCGTGGGCGCGGAACTCGCCCTGGCCGAT
GTCCTCGTCTTCCTAGACTCCCACGTGGAAGTCACCAAAGGCTGGCTGGA
GCCGCTCATTGCTCCCATTTTAGAGGACAACAGGACCTGCACTACTCCTA
TTATAGACACCATTGACTTTGATAACTTTGCCTACAGAAGGGGGAAGCCG
TCGAGGGGCTTCTTCAACTGGGAATTCATTATATTCAGCTTCCACTTCTC
AAGAGGAGGCGGTAGCCATGCCGGCTCGCATAAGAATCCCATAATGAATG
TGGCCTCTTTGCTATTGACGTGAGTGTTCTCTGAGCTTCGGTGGCTACGA
CAGGGCTTGAAGATCTGGGGAGCCGAGCAGTTCGAGCTGAGTCTTAAGCT
GTGTGTGCGAGGACAATCCTAGAAGTTCCCTGCTCTTAGGGTGCATCTCT
TTGAGACGGAATTCCAAATTCGCTAACCACAGTAAAATTGGAAAGAATAA
TTTCAAGGACCTACGCGTTCCTGAAA
FMO06263.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pgant8-RA | 2199 | CG7297-RA | 98..1179 | 9..1075 | 4975 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15684749..15685442 | 353..1036 | 2910 | 98.3 | Plus |
| 3L | 28110227 | 3L | 15683969..15684315 | 9..355 | 1735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:22:08 has no hits.
FMO06263.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:48 Download gff for
FMO06263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 98..1233 | 9..1123 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:29 Download gff for
FMO06263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 95..1230 | 9..1123 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:10 Download gff for
FMO06263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pgant8-RA | 98..1233 | 9..1123 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:10 Download gff for
FMO06263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15683969..15684315 | 9..355 | 100 | -> | Plus |
| 3L | 15684752..15685495 | 356..1085 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:48 Download gff for
FMO06263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15677069..15677415 | 9..355 | 100 | -> | Plus |
| arm_3L | 15677852..15678595 | 356..1085 | 96 | | Plus |
