FMO06264.5prime Sequence
1159 bp (1063 high quality bases) assembled on 2008-09-15
> FMO06264.5prime
CAGTCGACATGAAGCATCTCCTGGAGGATCCCTCGGTCCTGGCCGAGCTG
CAGGTGCTGCCGGATAAGACCGGTGGTGTACAGGATCGACAGGAGGCCGC
CAAGAATCCTGCAGAGAATTCCGTGCCCGACGAAGATTTGCCGGCTGCAG
GAGGCGATTTGCTACGCGTTAAGGATACTCTGGGCCAGCTGGCCTGCAGT
CTGCACAAGCTGTCCAAAAACGATCACATAGTCATCGATCGAAAGCGCCA
TCAGGTGATTCGCACAGATGCGGCTACGCAACAATTAACGATTTACCGCT
GTCCGGATCCCGCCGTCATGGGGATTCGCCCGGCGATAGAGAAAAATGCC
CAGAATCCGCCTGCCAAAGTGGGTAGACCATCGAAAAGAGCCTGTTCGGT
TGCCACCGCTCCTGTGGCGAAGAAACCAACACTAGCGGAGCAAAAACCTG
CTCCCGACACCCATCGCACTAGATCCGGTCGCCAGGTGCGCAGCTTGATG
CCACAGCCCGCTCCCGTGACCAGTGGCTCAGCGGTTGAGCCAAGTTCTGC
CCGCATGCTTGAGATGCTGGTGGCCGACTTGCGGGACAAGGACTACCGGG
CACCCATGGCAGCGCCGAAAAGCACGAGTGTCAGCAGCAGCGTCAGTATA
AGCCAGGAACCGACCACAACGACAACCATCCAACGAGCCGTGCCCAAAAA
TGCCGTTTGTCCCGGCTGTGGAAAGATCTTTTTGGGACGCCGTCTGCAGC
GTCACTTTGTCAAATTCCCAGAGCACATGCCGCGTCCGGGCGAGCAGACA
CCACCTGTAGCTGTAGCTACAGTACCATCAACGGTTCATCCTCCCTCCAC
GCCGTCGCTGTTCGGCCTTCTGACCGCCCAACTGCAGCGGCATTCCCATC
TCAGCGAAGAAAAGCGCTCTGATCTCTTTCTAACGAACTTAACGACTTTG
TGGAGCAGCTGCAATTGCGCAGCCAACGGCTTATACGGAATACCTCTGGA
CTGCATTTTGTAAATGCACGAATTGCACGAGTTTTGGGCATACCCGAAGA
TCAGTATGCGTTGATTGTCCGCCATGAGTCGCCCCTGCACCGATGCGAAT
CAAAGGGAAGCGCCTTGTTGCCGCACGGTATGTAAGAACCGCAATCTGTG
TTCTAGCAG
FMO06264.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13005-RA | 2027 | CG13005-RA | 111..1233 | 9..1123 | 5290 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16804070..16804893 | 241..1063 | 4010 | 99.4 | Plus |
| X | 23542271 | X | 16803760..16803992 | 9..241 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:48:32 has no hits.
FMO06264.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:27 Download gff for
FMO06264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13005-RA | 81..1194 | 1..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:30 Download gff for
FMO06264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13005-RA | 74..1187 | 1..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:56 Download gff for
FMO06264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13005-RA | 104..1217 | 1..1108 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:56 Download gff for
FMO06264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16803753..16803992 | 1..241 | 98 | -> | Plus |
| X | 16804071..16804969 | 242..1131 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:27 Download gff for
FMO06264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16697786..16698025 | 1..241 | 98 | -> | Plus |
| arm_X | 16698104..16699002 | 242..1131 | 97 | -> | Plus |
