FMO06265.5prime Sequence
1172 bp (1049 high quality bases) assembled on 2008-09-15
> FMO06265.5prime
CAGTCGACATGCTGACCCTGCGGGAGCGCCAAATCAATGCCATTAAGCAG
ATGCTTAATTTGAACTCGCAGCAGCCGAAAGCCCTAGCTGCCGAGCCCGT
GTGGAAGATCCTTATCTACGATCGCGTTGGCCAGGACATCATATCGCCCA
TTATTTCCATCAAGGAGCTGCGCGAGTTGGGCGTGACGCTGCATGTGCAA
CTGCACTCGGATCGCGACTCCATTCCGGATGTGCCGGCTATATACTTCTG
CCTGCCCACCGACGAGAATTTGGACAGGATTCAGCAGGACTTCTCGAGCG
GACTGTACGACGTGTACCACCTGAACTTCCTAGCTCCCATAACGCGCAGC
AAAATCGAGAATCTGGCCGCCGCAGCCCTGCATGCCGGCTGCGTGGCCAA
CATCCATCGCGTTTACGACCAGTATGTGAACTTCATCAGTCTAGAGGATG
ACTTCTTCATCCTAAAGCACCAGCAGAGCGATCAGCTTTCATACTACGCC
ATCAACCGGGCCAACACCCGCGATGAAGAGATGGAGGCCCTGATGGACTC
CATTGTAGACTCGCTCTTCGCCCTGTTTGTGACCCTGGGCAATGTGCCCA
TCATCCGCTGTCCGCGGAACAGTGCCGCTGAAATGGTGGCACGCAAGCTG
GAGAAGAAGCTGCGCGAGAACCTTTGGGATGCGCGTGCCAATTTGTTCCA
CATGGATGCCACGCAAGCCGGCGGCGGAGTGTTCAGCTTTCAGAGACCTG
TGCTCCTGCTGCTGGACAGGAACATGGATTTAGCCACGCCGCTCCATCAC
ACCTGGTCGTATCAGGCGCTTGTGCACGATGTACTGGACTTGGGACTGAT
CTTGTCTACGTGGAGGACGAGACGGCTAGTGCGGGAGCCCGCAAAAAACC
CAGGCCTGTGACTTGGACCGCAACGACCGCTTCTGGATGACGCACAAGGC
AGTCCATTTCCCACGGTGGCCGAGCCATCCAGGAGAGCTGGGATCCTATC
GGAACTCCGGAGGAGGAGATCAGCGCTTGAGACATCGATGGGTATCGAGG
GCGGTCGACTGCATTCTCTTTGGTCAATGAACCAACGGCAGCTCACCATG
CCGTCAATCCCTGCCCACTGAATGAAAGAGCGAATGTATCGACATTGGCA
CCAGATCCACTGCATCTTGAAC
FMO06265.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slh-RG | 4220 | CG3539-RG | 152..1336 | 9..1172 | 5160 | 96.9 | Plus |
| Slh-RC | 2197 | CG3539-RC | 152..1336 | 9..1172 | 5160 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2491512..2492201 | 885..197 | 3385 | 99.7 | Minus |
| 2L | 23513712 | 2L | 2492258..2492418 | 197..37 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 2491229..2491443 | 1089..884 | 540 | 93.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:32 has no hits.
FMO06265.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:31 Download gff for
FMO06265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 152..1273 | 9..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:31 Download gff for
FMO06265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RF | 147..1262 | 9..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:16 Download gff for
FMO06265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slh-RC | 152..1273 | 9..1116 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:16 Download gff for
FMO06265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2491198..2491439 | 888..1116 | 92 | <- | Minus |
| 2L | 2491509..2492201 | 197..887 | 99 | <- | Minus |
| 2L | 2492259..2492418 | 37..196 | 100 | <- | Minus |
| 2L | 2492493..2492520 | 9..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:31 Download gff for
FMO06265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2491198..2491439 | 888..1116 | 92 | <- | Minus |
| arm_2L | 2491509..2492201 | 197..887 | 99 | <- | Minus |
| arm_2L | 2492259..2492418 | 37..196 | 100 | <- | Minus |
| arm_2L | 2492493..2492520 | 9..36 | 100 | | Minus |
