FMO06267.5prime Sequence
1178 bp (1060 high quality bases) assembled on 2008-09-15
> FMO06267.5prime
CAGTCGACATGGGCGCCCAAAGTAAACTGGCCGAGATAGCCTTGAACTGC
ACCTGCTATGAGTATCACCATCCGTGGACAAAGAGCTGTGCCTGCGCTGC
GGCAGGAATGATGATCTCTGAGATCCCTCCCAGTCTGCGCACCTACGCCA
CTGTATACGTGTTTGCTCTAATCATGCGAGGACGCATTCCATCGCTGAAG
GATCTGAGACGCACTGCATCTGGAATCCTACAGTCGACAGCGTTTCTTTC
GATGAATGGAGGCCTCTTTGTCTTTGCCGTGTGCTACTTGCGACAGATCT
TGGGAGGATTCTACTTCGGCACAGTTGCTTGGCTGCCCTCGTTTTTGGCC
AGCTTTGCATGTCTTGCCTTCGAGCGTCCGGAACGCCGTGCTCCTCTCGC
ATTGTATGTGGCCAATGTGGGTATCGAAACGCTGTGGAAGATGATGGAGG
CACGAGGCTGGGTTCGATCCATTCCTAATGGACAGGTGTTCATCATGGGT
GCAAGTGTGACCGCCTTGATGTATTTATATCGCGCCGGATTGCACAAGAC
AGTGGCCAAGGATCCGACGTTCAAGGCTATTGCCCTGATCGTGGGCAAAG
AGGACGAGGGTCCACTGAAGACACCGGTGGTCACCACCACGCAAAGCTCT
CGCCAGGCTCCCCTCAACTTCCAAAGCATTTCAGCCTACGTACAGCTCTA
TGACCGCATGCTGAAGGCCAAACATCCAAGTTGTCCCCACAAGAGGGGCT
GTGTTCCCTACGCCCTTATTGGAGGACTAAAGCCATTCCTGGGCGGTGTT
GGCCTATCGGTGGGTCTAAAGCTGCTGCTCAACATTCCCCAGATCTTTAA
GTCTAAGATGCAGTGGCGCAAGCACATCTTCAACGGGGGATCCTTGCAGT
TGGGATTGGCGCTGGGCATCTTTCTCATTTCTTTTCAAGTCGACTACCTG
CGGACTGCGTCACACGTTTGGTTTCGACATGCTCCTCTTCGCCATTCCGG
CTGGCCTCATCGGATCGATTGGCTTCTTCCGTTTCCCGAACACCCGGTTG
CCTGTTATCTATGTGAAGTCCATGCTCTGCCCTACAATCTGGGCATCGCG
GAGGCCAGTGCCCGAGGTGCCGACCTTTGGCATGCTCCATGAACGATCTT
CCAGGCGTGTTCTTCCCATCTGAATCTT
FMO06267.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31259-RB | 2464 | CG31259-RB | 477..1611 | 8..1137 | 5295 | 98.3 | Plus |
| CG31259-RA | 1919 | CG31259-RA | 477..1611 | 8..1137 | 5295 | 98.3 | Plus |
| CG31454-RA | 1736 | CG31454-RA | 591..1330 | 231..971 | 650 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8524760..8525537 | 161..939 | 3830 | 99.7 | Plus |
| 3R | 32079331 | 3R | 8524420..8524573 | 8..161 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 8522321..8522710 | 231..620 | 630 | 77.4 | Plus |
| 3R | 32079331 | 3R | 8525609..8525814 | 938..1137 | 525 | 89.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:32:35 has no hits.
FMO06267.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:14 Download gff for
FMO06267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31259-RA | 469..1614 | 1..1141 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:34 Download gff for
FMO06267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31259-RA | 467..1612 | 1..1141 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:25 Download gff for
FMO06267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31259-RA | 469..1614 | 1..1141 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:25 Download gff for
FMO06267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8524412..8524573 | 1..161 | 98 | -> | Plus |
| 3R | 8524761..8525537 | 162..939 | 99 | -> | Plus |
| 3R | 8525611..8525817 | 940..1141 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:14 Download gff for
FMO06267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4350134..4350295 | 1..161 | 98 | -> | Plus |
| arm_3R | 4350483..4351259 | 162..939 | 99 | -> | Plus |
| arm_3R | 4351333..4351539 | 940..1141 | 91 | | Plus |
