FMO06268.5prime Sequence
1162 bp (1050 high quality bases) assembled on 2008-09-15
> FMO06268.5prime
CAGTCGACATGGCGCATAATACGCGCAACTCCGATTTATCGCAGATAGCT
GTCAATGCCAACAATATACCCGATGACAGCGTCGATTGTGGCATCAAGGG
TCTGGGATGGTGTCGCGGTCCCGGATGCCAGAAATATGCCCGACTGCGCA
CCTTCATCCTGGTACTGGCCATCTCGGGAACCCTACAGGGCGCCTGCGAA
TCCTACTTCCGCGTGTCGGCCAAACAGGCTTCCTTTCAGTTCGGTTGGAA
TCCACTGATTGTGGATTGGCTGCTGGTGGCCAGTGGATTATTCCAGGCGG
TCTTTGCGTTGGCTTTCGCCTACTGGGCGGACGTCTATCATCCCATCAAA
TGGCTGGTGGGAACTCTGATGCTGCAGGCGGTCACCTGTGTGGTGGCTGT
GATTCCCTCCATTATGAACTTTGCCGATGGCAACCAGGCAAAGGATGCTC
TGCTGGATGCCAATATGTGCGCCACATCCTTGGCACAGTTCCAAAGGCTC
ACACTGACCGAGGCCCAGAGCAGCAGCCTAACCCTTGCGATGCTCTTCGT
TCTTCAGCTGGCCTTGGGAATGGGAGGATTGGCCTACTACACGCTGGGGG
TTAGCTACATCGACGACAACTCCCTGTCCCAAGATAGTCCGGCGGTGATA
GGTGCTGCTCTGGCTGCGCGCGTATTTGGCCAGCAGGCTGGATCCTTCCT
AGTGCTTGGCGTTGGTCTCACCCATGTGGGTTGGTGGCTCGGTTGGGTGA
TACTGGCACCCTTCATTTTCGTGGGCGCTGTGCTCCTGGGACTGTTTCCC
AAACGACTGCCAAAGACCGTCATTCACCAGGCGGCGCAACGGATCATTGA
GCAGTCCAGCATGCGTAGGTTTGGCAGCCAGTTCTCACATATATGGATGA
CTCCGATTTTTGGGCATCTCTGAAGAGGCTATTCAATACCGCCTACTGAT
GTTCATCTGTTGAGCATCATGTGCGTGCAGAGTGCAGTCGTGACTATGGC
CTCCAGGAAGAAGAGCTATCTGCAGAGCAGATTCTTTTTGCCCTACAACG
AACAGGATGCCTTGCGCCAATGGAAATCGGCATTCGTTTCTTTTCCTCAG
CCCCAGTATGGCATGGGAATGCTGATAAGTGCTGCATCTCGAAGGCAGTT
TTCTGCTCGTAA
FMO06268.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oatp33Eb-RA | 2743 | CG6417-RA | 179..1350 | 9..1162 | 5305 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12449832..12450477 | 422..1064 | 2940 | 98.8 | Plus |
| 2L | 23513712 | 2L | 12448806..12448995 | 75..264 | 950 | 100 | Plus |
| 2L | 23513712 | 2L | 12449596..12449753 | 264..421 | 790 | 100 | Plus |
| 2L | 23513712 | 2L | 12448662..12448728 | 9..75 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:05:46 has no hits.
FMO06268.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:14 Download gff for
FMO06268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp33Eb-RA | 179..1350 | 9..1162 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:36 Download gff for
FMO06268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp33Eb-RA | 177..1346 | 9..1160 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:21 Download gff for
FMO06268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp33Eb-RA | 179..1350 | 9..1162 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:21 Download gff for
FMO06268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12448662..12448728 | 9..75 | 100 | -> | Plus |
| 2L | 12448807..12448995 | 76..264 | 100 | -> | Plus |
| 2L | 12449597..12449753 | 265..421 | 100 | -> | Plus |
| 2L | 12449832..12450570 | 422..1144 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:14 Download gff for
FMO06268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12448662..12448728 | 9..75 | 100 | -> | Plus |
| arm_2L | 12448807..12448995 | 76..264 | 100 | -> | Plus |
| arm_2L | 12449597..12449753 | 265..421 | 100 | -> | Plus |
| arm_2L | 12449832..12450570 | 422..1144 | 96 | -> | Plus |
