FMO06269.5prime Sequence
1144 bp (1042 high quality bases) assembled on 2008-09-15
> FMO06269.5prime
CAGTCGACATGGACATACTGAGGAGCGATGCCGATTGCGGCGAGTCCGAT
ATTGCCAAGTTCTATGCAAACAAAACCATCCTTATTACGGGTGCCACCGG
ATTTATGGGCAAGGTTCTGGTGGAGAAACTACTGCGTAGCTGTGCCGACC
TGAACGTCATATATCTATTGATACGCACCAAAAAAGGGGTCGATCCCAGT
GTGCGCAAGGAGCAGTACTTCAAGTGTGTGATCTTTGGCAAGCTGCTGGA
GAAGAATCCCGGCATCGTGGACAAGGTGCGCGTGGTAAAGGGCGATCTGC
TGGAGCCGGACCTTGGCCTGAGCGCCAATGACACCAACACACTCGCCTCC
AACGTCGAGGTGGTCTTCCACTGTGCGGCCAATGTGCGCTTCGACCAGCC
GCTGCGTCCCATGGTCATGATGAACGTGGTGGGCACCCTGAAGGTCCTCC
GCCTCGCTGAGAAGATGAGCCAGCTGCAGGCTCTGGTCCACGTGTCCACC
TCATACTGCCAGTGCAACGAGAGCGTTCTGGAGGAGCGAGCCTACCCGGC
TCCACAGAACCCCTTCTCCATCATCGAAATGGTGGAGACGATGGACGACG
AAGCTCTGGCGGAGATTACACCCAAATTACTAAACGGCTTGCCAAACACG
TACGCTTACAGCAAGGCGCTGTCGGAAGATTTAATTTGCAGATACAACAA
TAAGCTGCCCATAATCATCACAAGGCCCTCGATCGTGACGGCCGCCATTC
ACGAGCCATTGCCCGGCTGGATCGAGGGCGTCAATGGACCCACCGGCCTA
ATGATCGGCGCCGCCCGCGGAGTCATCCGATCGATGCACTGCAATCCGGA
CTACGCCTCCACGGTGATACCCGTAGACAAGGCCATTAACGGCATGATCC
TGTGCGGCTTTCAGCGCGAAAGGCCAGCCAGGAGAGGTACAGCAGACGGT
GTTGAGTTCTGCATCTGTGCATCTCCAGCAAGGCGCTGATGTCCTGGGGC
GACAGCATCGAGACGGGTCGTCGATTCTTCTACGAAACGCCGCTCAGCTT
GCGCTCTGTATCCGGGTGATCCATCAAAAGAACTACTCACCACCTTTTCG
GCCCTATCTTTCTCCGATACTGCCCGCATACTTCTGAACTTTTG
FMO06269.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12268-RC | 1864 | CG12268-RC | 207..1347 | 8..1134 | 5240 | 98 | Plus |
| CG12268-RB | 1757 | CG12268-RB | 100..1240 | 8..1134 | 5240 | 98 | Plus |
| CG12268-RA | 1775 | CG12268-RA | 118..1258 | 8..1134 | 5240 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:53:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23945017..23945412 | 625..230 | 1980 | 100 | Minus |
| 3R | 32079331 | 3R | 23944203..23944616 | 1134..735 | 1325 | 94.2 | Minus |
| 3R | 32079331 | 3R | 23946609..23946831 | 230..8 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 23944685..23944794 | 735..626 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:53:11 has no hits.
FMO06269.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:29 Download gff for
FMO06269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12268-RA | 118..1269 | 8..1144 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:38 Download gff for
FMO06269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12268-RB | 95..1246 | 8..1144 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:01 Download gff for
FMO06269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12268-RA | 118..1269 | 8..1144 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:01 Download gff for
FMO06269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23944192..23944615 | 736..1144 | 93 | <- | Minus |
| 3R | 23944685..23944794 | 626..735 | 100 | <- | Minus |
| 3R | 23945017..23945411 | 231..625 | 100 | <- | Minus |
| 3R | 23946609..23946831 | 8..230 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:29 Download gff for
FMO06269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19769914..19770337 | 736..1144 | 93 | <- | Minus |
| arm_3R | 19770407..19770516 | 626..735 | 100 | <- | Minus |
| arm_3R | 19770739..19771133 | 231..625 | 100 | <- | Minus |
| arm_3R | 19772331..19772553 | 8..230 | 100 | | Minus |
