Clone FMO06270 Report

Search the DGRC for FMO06270

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:62
Well:70
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG15554-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06270.5prime Sequence

468 bp (468 high quality bases) assembled on 2008-09-15

> FMO06270.5prime
CAGTTCGACATGTACAGGACTTTTGTTTGGCTGTTAACCCTAATGGCAGT
GGCAAGTGCCGCCACCTCGGGTCGGGACTACTTGCCGCGCCCCCCCGCCA
AAGCCTATGTCTACGGCACGCCCCCGCCCAGCACGATGGCTCAGTTGCGA
CGGATAATCCAAGGTCACCTGGAGCGCTTCCAGCTGGCGGAGCAGGCCCA
CTTTTCCCGCCGCGCCAATGTGCAGCTGGGGAAATCGGAAGTGCCGGCGG
ACAGAAAACCGCTGGCGATGCAATTGTGGGTGGTTCGCACGCCCGCCATT
TCCGGCGCGGCCTCGGATAACGTCCTCGATTACGCCCTGCCGCCCAACAC
GCCCACTCCGAAGGACTACGCGCACAAGTTCCTGCCCGAGGGCAAGGATG
TGGTACCCGGAAGCTCTTACATACCGCTGCGGTTGCTGGTGATAAAGCGC
GCAAGCTTTCTAGACCAT

FMO06270.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG15554-RA 801 CG15554-RA 89..536 10..457 2210 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31126643..31127070 30..457 2110 99.5 Plus
Blast to na_te.dros performed on 2014-11-28 20:16:20 has no hits.

FMO06270.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:26 Download gff for FMO06270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 83..538 7..462 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:21 Download gff for FMO06270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 83..538 7..462 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:06 Download gff for FMO06270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 85..540 7..462 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:06 Download gff for FMO06270.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31126233..31126257 7..30 96 -> Plus
3R 31126644..31127074 31..462 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:26 Download gff for FMO06270.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26951955..26951979 7..30 96 -> Plus
arm_3R 26952366..26952796 31..462 98   Plus