FMO06271.5prime Sequence
1137 bp (1036 high quality bases) assembled on 2008-09-15
> FMO06271.5prime
CAGTCGACATGGACCGCAGCGGGAGCTCCGATTTCGCAGGAGCAGCTGCC
ACGACGGGCCGCTCGAATCCCGCGCCCTGGAGCGACGACAAAGAGTCGCC
AAACAACGAGGACGACTCCAACGAGGACGATGGCGACCACACGACGCCCG
CCAAGGTCACCGATCCACTGGCCCCCAAGCTGGCCAACAACGAGCGCATT
CTGGTGGTCTCCGTGACGGAGAGGACTCGCGAGACCTGGGGACAGAAGGC
GGAGTTCCTCCTGGCCGTGATTGGGTTCGCAGTGGATCTGGGCAATGTGT
GGCGCTTCCCGTACATCTGCTATCAGAACGGAGGCGGCGCCTTCCTGGTG
CCCTACTGCCTCTTCCTCATCTTCGGTGGACTGCCCCTGTTCTACATGGA
GCTGGCGCTGGGCCAGTTCCACCGATGTGGTTGCCTCAGCATCTGGAAGC
GCATCTGTCCGGCCCTAAAAGGCGTGGGCTATGCGATCTGCCTAATCGAC
ATTTATATGGGCATGTACTACAACACGATTATCGGCTGGGCGGTATACTA
CCTCTTCGCCTCGTTCACATCCAAGTTGCCGTGGACGTCGTGCGATAATC
CCTGGAACACTGAGAACTGCATGCAGGTGACCAGTGAGAACTTCACGGAA
CTGGCCACGTCGCCGGCCAAGGAGTTCTTTGAGCGAAAGGTTTTGGAGAG
CTACAAGGGCAACGGGCTGGACTTCATGGGTCCGGTGAAGCCCACGCTGG
CACTCTGCGTCTTCGGGGTCTTTGTCCTGGTCTACTTCTCCCTGTGGAAA
GGAGTGCGCAGTGCCGGAAAGGTGGTGTGGGTCACCGCTCTGGCTCCTTA
TGTGGTGCTAATCATCCTGCTGGTTAGAGGAGTTTCCCTGCCCGGCGCGG
ACGAGGGCATCAAGTACTACCTAACCCGGAGTGCACAAACTGAAGACTCA
AAGTCTGGATCGACGCCCGCATCCCAGATTTTCTTCTCCTTGGCCCGGAT
TCGGACCCTGCTGCCCTGTCCAGCTACACAGTCAACAACACTGCTATCGC
GATGCTCTTCATCCCCAGCAGCATCCACTGCCTGAACAGTTTCTTGCCGG
CTTTGTATATCTTCCGATTGGGTACTGCCTACGTTCA
FMO06271.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SerT-RB | 3725 | CG4545-RB | 1000..2108 | 9..1106 | 5090 | 98.1 | Plus |
| SerT-RA | 3183 | CG4545-RA | 458..1566 | 9..1106 | 5090 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24408962..24409241 | 472..193 | 1400 | 100 | Minus |
| 2R | 25286936 | 2R | 24406951..24407385 | 1106..683 | 1380 | 93.6 | Minus |
| 2R | 25286936 | 2R | 24407441..24407654 | 683..470 | 1070 | 100 | Minus |
| 2R | 25286936 | 2R | 24409387..24409572 | 194..9 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:52:36 has no hits.
FMO06271.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:56 Download gff for
FMO06271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SerT-RA | 452..1573 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:22 Download gff for
FMO06271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SerT-RA | 449..1570 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:33 Download gff for
FMO06271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SerT-RA | 452..1573 | 1..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:33 Download gff for
FMO06271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24408963..24409239 | 195..471 | 100 | <- | Minus |
| 2R | 24409387..24409578 | 1..194 | 97 | | Minus |
| 2R | 24406944..24407385 | 683..1114 | 94 | <- | Minus |
| 2R | 24407442..24407652 | 472..682 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:56 Download gff for
FMO06271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20294467..20294908 | 683..1114 | 94 | <- | Minus |
| arm_2R | 20294965..20295175 | 472..682 | 100 | <- | Minus |
| arm_2R | 20296486..20296762 | 195..471 | 100 | <- | Minus |
| arm_2R | 20296910..20297101 | 1..194 | 97 | | Minus |
