FMO06272.5prime Sequence
1142 bp (1022 high quality bases) assembled on 2008-09-15
> FMO06272.5prime
CAGTCGACATGATCCGTGGAATCTTGCTCCTGCTGCTGGGAACCACCAGG
TTCAGCCCCATCCAGTGCATCTCCAATGACGTGTACTTCAAGATGTTTTC
GCAACAGGCGCCGCCGGAGGATCCGTGCTACAATAAAGCGCACGAGCCAC
GCGCCTGCATTCCGGACTTTGTGAACGCCGCCTACGATGCTCCAGTGGTG
GCCAGTTCCACGTGCGGATCGTCGGGTGCGCAGCGATATTGCGAGTACCA
GGATCACGAGCGCTCCTGCCACACCTGCGACATGACGGATCCGTTGCGCA
GCTTTCCAGCCCGCTCGCTGACCGATTTGAATAACTCGAATAATGTGACC
TGCTGGCGCAGTGAGCCGGTGACCGGAAGTGGGGACAACGTAACCTTGAC
CCTCTCGCTGGGCAAGAAGTTCGAGCTGACCTATGTGATCCTACAGCTGT
GCCCGCATGCTCCGCGTCCCGATTCGATGGTGATCTACAAGAGCACCGAT
CACGGGCTCAGTTGGCAGCCATTCCAGTTCTTTAGCTCCCAGTGCCGCCG
GCTTTTCGGACGTCCCGCCCGCCAATCCACTGGACGCCACAATGAGCACG
AGGCCCGCTGCAGCGATGTCACCAGGCCACTGGTCTCCAGAATTGCCTTC
AGCACACTGGAGGGACGCCCATCGTCACGGGATCTGGACTCATCGCCGGT
GCTGCAGGACTGGGTGACGGCCACCGATATCCGGGTGGTGTTCCATCGCC
TTCAACGCCCCGATCCGCAGCCCTGCTCTCATTGGAAACCGGAGGAGCAA
CGGATTTGGCCAGCGGCAAGTACAGTGTGCCCCTGGCCAATGGACCCGCT
GGCAATATATTGAGGCGAATCTCGGTGGGGATGTGGCACATCCGGCAGTG
GATTGCACTATGCCATCTCTGACTTTTCGGTGGGGCGGACGGTGCAGTGC
ATGGACACGCCTCAAGTGTCACGGACGCAGTGGGCAGCTGACTGCGAGTG
CAGCACATTACCGCTGGAGGGATTCCGACGCTGCAAGCCATTCATTCGAT
CGTCATGGGCCCGAGCCACCGCCAAGAGCCAATGAATGCAAAGAGTGCCA
CTGCAACAGCACGCCCGTCAGTGCGCTCAATATGGATTCTTC
FMO06272.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NetA-RC | 3339 | CG18657-RC | 683..1832 | 7..1136 | 5135 | 97.6 | Plus |
| NetA-RB | 3249 | CG18657-RB | 589..1738 | 7..1136 | 5135 | 97.6 | Plus |
| NetA-RA | 3245 | CG18657-RA | 589..1738 | 7..1136 | 5135 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14652143..14653246 | 1093..7 | 4590 | 97.7 | Minus |
| X | 23542271 | X | 14747315..14747424 | 752..643 | 220 | 80 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:40:23 has no hits.
FMO06272.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:47 Download gff for
FMO06272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NetA-RA | 586..1744 | 1..1142 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:24 Download gff for
FMO06272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NetA-RA | 583..1741 | 1..1142 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:25 Download gff for
FMO06272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NetA-RA | 586..1744 | 1..1142 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:25 Download gff for
FMO06272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14652143..14653249 | 1..1095 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:47 Download gff for
FMO06272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14546176..14547282 | 1..1095 | 97 | | Minus |
