FMO06273.5prime Sequence
1156 bp (1040 high quality bases) assembled on 2008-09-15
> FMO06273.5prime
CAGTCGACATGAGATTAGCGTTAATATTGGGCACTCTTAGTGCTATAGTG
TGCTTGGCCAGCAGCTTGAGCCAGTCAGAGGCGAGTGGCTCAAAGGGCAA
TGGATTTCCCAAAAAGGTTACCACCCTGAAGAAGCGACCAACAAAAACGC
CGACCACAGTTCCGATTTCCATCAGCAGAGCAACCACTTTGAAGCCCAGT
AAGCCACGCGTGAAGATCGGCACATCGGCAACCACCAAGAGCCCCACGAA
AGCACCGGCCTTAACCGAGACATTTGGCAATCTGCCGGCGGATGACCTGG
AATTCATTAAGGAGCTGGACAAGCAGTTCAAACTGCACGGAAACAAGATC
AAGATCAAGGTGGAGAGGGATAATTCCACGAGTAGCGGCGGCAAGAACAG
CAAGAGGACCATCGAGGGGGATTTGGGATACGGCTACTCGCATCCTGGCT
ATGATTACACGCCGCCCAAGTTCATGTTCTATCCATACTCACAGCATGAT
ATTCCCTCGGGCTTTGCCCTTCCACAGCCACATCCGGAGGAGCAGGAGGA
GGAGGCACACCAGCCGGCAATGCAACATCATCACAATCACGAGCAAGTGA
CCAGCGTGACCATTGAGCCCTCGTACTCCTACGAGCTTAAGCCCCAGACC
AGCTATGAAACCCAACCGCAGCACACAGCTCCCGAGCAGCCGCAGATTGA
TCTGCCCCAGGATGAAGCGGAAAGTCCCAGTGGTGCAGGTGGTTCCAGTG
GCCACGGGGGATATCAGGAGCCCGTCATTGTCTTGCGTATTCCGGACCCG
CCAAGTACGCCGCCCATTTGCAGACCCTTCTCCAGCAATATCTGGAGATC
AGAGCGGCCCAGTACCTCAGCTTGCTCCAGAGGCCGATCAGCAGCAACAA
CAACAGCAGCATCAGCATGTGGATCCTTCGCAGCAATATGGACCACCAGA
CCGGGCCACCTACCATCAGGAAGTCAGCTTACGCCCACCACTGGCACCAA
CGCCGGCACCCGTCCAGTACCGCACCCATCGATGATGTCTACCAGAGCTA
CAGGGTCGCCACAAGCAACAGCCTGCAGCGCAGCAGCAACATATGAGCCG
CAACAATACTACCGCCCATGGACCTACAGCGCCCCACACAGTCTCTACGC
TCAGCC
FMO06273.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11380-RB | 2801 | CG11380-RB | 381..1539 | 4..1156 | 5360 | 98.2 | Plus |
| CG11380-RA | 2704 | CG11380-RA | 284..1442 | 4..1156 | 5360 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1194663..1195382 | 427..1142 | 2980 | 97.4 | Plus |
| X | 23542271 | X | 1194197..1194595 | 29..427 | 1995 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:06:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2410..2632 | 887..1108 | 165 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2543 | 887..1109 | 158 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2991 | 868..1093 | 157 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6918 | 887..1091 | 153 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2514 | 887..1090 | 152 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6945 | 887..1073 | 150 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2535 | 887..1079 | 144 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..6924 | 886..979 | 139 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2806..2855 | 887..936 | 133 | 74 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6864 | 1039..1111 | 133 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2458..2523 | 887..952 | 132 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2635..2674 | 887..926 | 128 | 80 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1147 | 887..972 | 124 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2439 | 887..943 | 123 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6996 | 887..1070 | 123 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6959 | 887..1075 | 120 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1555..1585 | 887..917 | 119 | 87.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2662 | 887..917 | 119 | 87.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1078..1157 | 864..946 | 119 | 63.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1110..1140 | 887..917 | 119 | 87.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1113..1143 | 887..917 | 119 | 87.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1567 | 889..917 | 118 | 89.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2442..2515 | 522..598 | 117 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1587 | 885..916 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6914 | 887..1010 | 114 | 62.4 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7962..8017 | 887..936 | 113 | 73.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9406..9461 | 887..936 | 113 | 73.2 | Plus |
FMO06273.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:21 Download gff for
FMO06273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11380-RA | 281..1442 | 1..1156 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:39 Download gff for
FMO06273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11380-RA | 275..1436 | 1..1156 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:17 Download gff for
FMO06273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11380-RA | 281..1442 | 1..1156 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:17 Download gff for
FMO06273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1194198..1194595 | 30..427 | 100 | -> | Plus |
| X | 1194664..1195398 | 428..1156 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:21 Download gff for
FMO06273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1088231..1088628 | 30..427 | 100 | -> | Plus |
| arm_X | 1088697..1089431 | 428..1156 | 97 | | Plus |
