FMO06274.5prime Sequence
1116 bp (1023 high quality bases) assembled on 2008-09-15
> FMO06274.5prime
CAGTCGACATGATTTTTTCCACGGATTTGCATTGGCAATCCTTGCTGGCA
GGACGCATTCCGGTGGCCTCCATGACAGGACCCATTAAACGCGGACTGCT
CTGGCAGCAAAGGGATCGGCTCTTCTCTCGCTGGAAGGAGCGATACTTTG
TGCTCACTCGTGACTACTTGCACTGCTTCAAAAGAGCCTCGGGATCGGCC
AATGAACGTGCCTCGGATATGGGACAGTTTATCTTCAAGGTCAAGCTGGT
GGACGTGGAGAAGGTGGAGTGGCTGAATCGGCGCTCCTACAGCGCCATTG
GTCTGCTACTGGGTCGCGAGGGTCGTGTTCTACTCCGCTGCGATGATGGC
CTCGAGGATTGGTTCGAGCTGCTGGAGGAATGCACAATGACCTCCAAGGA
GCGCAGACGAGCCCTGAAGATTGCCCAAGGACCCAGATCCCGAGCCTCAT
TGGCTGCTCCCGTTTCGCATGCTTCGCTGCAGTTCCAGCATTTTGGACTC
GGAGGCACTTACTCGAGTGCCCTGGACGATTGGCTGATGACGAATGGAAC
CGGTGGTCTGGCCCGGCACAAGATTGGAGCTGGCAGTCTGAACGGTTATG
GCGGGGCCAATCCCTTCCTGTTCTCCGATTCGGTGCCGGATCTGAGTGCC
CTGAACAACGAAAACCACAATCATCACCTGAGCGGCATCAGCACGAACCA
CTCGACGCCGCAAAAGATACCGCACCACAGCAATGCGAATCTCAGTCGAT
ACTCCAATGGATATGTCTCGGCCCAGAACAGTTTCACCCAAGCCGGAGCA
CTCTACGGATCGCCTAGGCGGATCTTTATCAACAGCAGCTTCGTTCAATC
AGTGGTGGATGAGGAGACCGAGGAGACGGAGTTCAGCTGAGAGACCCAGA
CTGTTCCGGGAGTTAGCGCTACTCCGGATATGCAACGAACTGGACGCGAT
TGGCTGTACCGAAGCCAAGGCGCCCACTGATATGAGCACTCAGTCAACAA
TTGTTACCCACTGGCGCAGCAGCACATCGGGCTGCAACCGAACTGACTGT
TCGACCATGATAATGGCTGAACCGCCCCATTCGAGCACCGCCCCTCGAGC
TACGGGGGGCGAACTG
FMO06274.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32982-RB | 2426 | CG32982-RB | 216..1344 | 9..1112 | 4905 | 97 | Plus |
| CG32982-RD | 3241 | CG32982-RD | 1057..2159 | 35..1112 | 4775 | 96.9 | Plus |
| CG32982-RG | 2766 | CG32982-RG | 790..1892 | 35..1112 | 4775 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9161383..9162004 | 376..986 | 2600 | 97.9 | Plus |
| 2L | 23513712 | 2L | 9161129..9161269 | 238..378 | 705 | 100 | Plus |
| 2L | 23513712 | 2L | 9154658..9154765 | 35..142 | 540 | 100 | Plus |
| 2L | 23513712 | 2L | 9156497..9156596 | 142..241 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:53:22 has no hits.
FMO06274.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:36 Download gff for
FMO06274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RB | 207..1348 | 1..1116 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:35 Download gff for
FMO06274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RB | 205..1346 | 1..1116 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:06 Download gff for
FMO06274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RB | 207..1348 | 1..1116 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:06 Download gff for
FMO06274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9151405..9151440 | 1..35 | 91 | -> | Plus |
| 2L | 9154659..9154765 | 36..142 | 100 | -> | Plus |
| 2L | 9156498..9156594 | 143..239 | 100 | -> | Plus |
| 2L | 9161131..9161268 | 240..377 | 100 | -> | Plus |
| 2L | 9161385..9162012 | 378..993 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:36 Download gff for
FMO06274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9151405..9151440 | 1..35 | 91 | -> | Plus |
| arm_2L | 9154659..9154765 | 36..142 | 100 | -> | Plus |
| arm_2L | 9156498..9156594 | 143..239 | 100 | -> | Plus |
| arm_2L | 9161131..9161268 | 240..377 | 100 | -> | Plus |
| arm_2L | 9161385..9162012 | 378..993 | 98 | -> | Plus |
