FMO06275.5prime Sequence
1140 bp (1013 high quality bases) assembled on 2008-09-15
> FMO06275.5prime
CAGTCGACATGCCCGAGTTATCAAGTGAACTTCAAAAATTCTTTGCCTTT
GTGGACGGCAAAAAAGAAGATTACATCGGGGCCCTAAAAACCGTTGTGGG
TATTCAGTCCGTATCAGCCTGGCCCGAAAAGCGAGGCGAGATCGGTCGTA
TGGTGGAATGGACCGCGGATCGGCTGAGGTCTCTGGGCGCCGAGACAGAG
CTGGCAGATGTGGGTCAGCAGACTTTGCCGAACGGCCAGATTATACCTCT
ACCAAAGGTTCTGCTGGGAACTTTGGGCAAAGACCCCTCTAAGAAGACCG
TGTTGGTCTATGGTCATTTGGATGTGCAGCCCGCCCTGAAGGAAGATGGA
TGGAACACCAATCCCTTTGAGCTTACAGAGGTGGATGGAAAACTGTTTGG
ACGCGGGGCATCCGACGACAAGGGACCTGTTCTGTGCTGGATCCACGCTA
TCGAAGCTTATCAGAAGCTCAACATTGCACTGCCTGTGAATGTTAAATTC
GTATTTGAGGGAATGGAGGAAAGCGGCAGCGAAGGCCTCGATGACTTGTT
ATTGGAACGTAAAGATAATTTCTTAGCGGATGTTGATTTTGTTTGCATAT
CCGATAACTACTGGCTTGGAAAAAAACGCCCTTGCCTCACATATGGGCTT
CGCGGTTTGGCATACTTTCAAGTGGAGGTGGAATGCTCCAGCAAAGACTT
GCATAGTGGAGTTTTTGGGGGTACAGTTCACGAAGCAATGCCGGATCTGT
GTCATTTGCTGAGCATTCTTGTCGATAAAGATACAAATATCCTAGTCCCT
GGTGTGGATCGCGACGTCGCACCACAGATTAAGAACGAGCAATCTATATA
TGAGAACATAGACTTTGAAGTTTCTGAGTACAGAAAGACATTGGTGTTGA
ACAGCTGCCGCATAATGGCGATAAAACAGTTACTTCAGCCAGGTGCGCTA
TCCCAGTCTTTCTGTCACGGAATGAGTGCATTTTATGAGCCAGGCGCAAA
ACTGTCATCGAGAGTTATTGGTAAGTTCTCTTTTCGCCTGTCCACAAGAT
CAAAGCAATTGAGGATGTTGTTGTAAATACTTATGATATGGGCACGAGAT
CCTACATGAGTACAATGCTTCACTGGCAGCCTGACTGAGA
FMO06275.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17337-RA | 1661 | CG17337-RA | 100..1190 | 9..1077 | 4905 | 97.7 | Plus |
| CG17337-RC | 1522 | CG17337-RC | 1..1051 | 49..1077 | 4705 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5698456..5699226 | 47..817 | 3855 | 100 | Plus |
| 2R | 25286936 | 2R | 5699286..5699352 | 816..882 | 335 | 100 | Plus |
| 2R | 25286936 | 2R | 5699415..5699541 | 883..1001 | 310 | 92.1 | Plus |
| 2R | 25286936 | 2R | 5697971..5698008 | 9..46 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:00:16 has no hits.
FMO06275.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:01 Download gff for
FMO06275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17337-RA | 93..1158 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:52:25 Download gff for
FMO06275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17337-RA | 111..1176 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:23 Download gff for
FMO06275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17337-RA | 93..1158 | 1..1053 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:23 Download gff for
FMO06275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5697964..5698008 | 1..46 | 91 | -> | Plus |
| 2R | 5698456..5699224 | 47..815 | 100 | -> | Plus |
| 2R | 5699286..5699353 | 816..882 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:01 Download gff for
FMO06275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1585469..1585513 | 1..46 | 91 | -> | Plus |
| arm_2R | 1585961..1586729 | 47..815 | 100 | -> | Plus |
| arm_2R | 1586791..1586858 | 816..882 | 98 | -> | Plus |
