FMO06276.5prime Sequence
1158 bp (1048 high quality bases) assembled on 2008-09-15
> FMO06276.5prime
CAGTCGACATGGACGTATCCGCCTCCACGTCGTTTGAATCCTCGCCGGAC
AAGAGAAACAGCATCTATGTGGGCGACAACACTTTCTACGACAGCGCCCT
GGATCACCAGCTGTCCACCACGGCCTACAAGTCGTGCAATGAGAGCCTTA
TCAGCGAACTCAGCCAGAATCCTCTTGGCCCCTCGAACTCGGCCAACAAG
ACAGCTAGTGCGGAATTTGGCAATGAATCCGCTGCATTCAAGCCCCTCGG
ATCCCCGGCAGCTTTCAACAATGCCACGCCAGCGCTAAATGCCAGCATGC
TGCTGATTCAGTCGGAGAGCACGGACACTAATACCTCGCAGGAGGAGGTG
GACCCCAAGTCACAACTGGCCAACAAGACAATATTCAAGACGGATAATCC
CAACCTGTCAATTATAGAAATTAACGATAACTCGATTAAGGAGGAGGACC
TCGAGAAGGTGGTGCTGGTCGAGGGCGACAGTGTGAAGAATCTTTTGAAG
AAGTCGCCCAGCAAGGAGGCTTCGGCAAACGCTGACAAAAGACGCCGCAA
GGAATCCCTACTGCACACGAGCAAACAAAAATTGGACATTTCCATCGCTG
AAGCTTCGGCAGCCGCCGATGGTGATGGCGAGAAGCGGGATCTGGTGTCG
GTCATAGATCAGCCGCAGACCAAGCGCGAAATCACAATTTACGATACCAT
TGAGGAGTTCGAACAGAATCTGCCGTCGACGGTGACGCTGTTGAACACGC
CCTTCGGCAGCAAGGTATATCTTGTGGGCACGGCCCACTTCAGCGAGGAG
TCGCAGGATGACGTCTCTTATGTCATTCGCAATGTCCGTCCAGATGTGGT
AATGGTGGAGTTGTGTCCATCGCGCATACACATCCTTAAGCTCGATGAAA
GACCCTGCTGGAGAAGCCAAAAGCATCAATATTCCCAAGATTCGAGGAAT
CCTGCACACGCACGGCTACATCATGGCATCTTTTCATCCTACTGCTGCAG
ATGACGCTCAGATCGCCAGACTGGGCATGGCGCCCGGTGGCGAATTTCGC
CGTGCTCGAGAGATCACAAGCTGCCCGTGCATCTACTCTAAGGCGATCGC
CATCCGCATCCCACTTTAACCGGCCTCTGACGCCTTGGCATGTGCAGACC
TGAACTGG
FMO06276.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12360-RB | 2795 | CG12360-RB | 178..1305 | 8..1118 | 5195 | 98.2 | Plus |
| CG12360-RA | 2158 | CG12360-RA | 349..1476 | 8..1118 | 5195 | 98.2 | Plus |
| CG12360-RC | 1309 | CG12360-RC | 178..311 | 8..141 | 670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13028203..13028885 | 823..141 | 3415 | 100 | Minus |
| 3R | 32079331 | 3R | 13029919..13030052 | 141..8 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 13028027..13028146 | 939..822 | 500 | 98.3 | Minus |
| 3R | 32079331 | 3R | 13027845..13027968 | 1055..938 | 360 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:42:01 has no hits.
FMO06276.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:05 Download gff for
FMO06276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-RA | 343..1457 | 1..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:52:31 Download gff for
FMO06276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-RB | 172..1286 | 1..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:40 Download gff for
FMO06276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-RA | 343..1457 | 1..1101 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:40 Download gff for
FMO06276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13027807..13027966 | 940..1086 | 91 | <- | Minus |
| 3R | 13028027..13028146 | 822..939 | 98 | <- | Minus |
| 3R | 13028205..13028884 | 142..821 | 100 | <- | Minus |
| 3R | 13029919..13030058 | 1..141 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:05 Download gff for
FMO06276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8853529..8853688 | 940..1086 | 91 | <- | Minus |
| arm_3R | 8853749..8853868 | 822..939 | 98 | <- | Minus |
| arm_3R | 8853927..8854606 | 142..821 | 100 | <- | Minus |
| arm_3R | 8855641..8855780 | 1..141 | 97 | | Minus |
