FMO06278.5prime Sequence
1170 bp (947 high quality bases) assembled on 2008-09-15
> FMO06278.5prime
CAGTCGACATGCTGCTCAAAGGCGCACAGCTGCTGCGATGCGGATTGGTC
TCACCACACCGGAACTCGAACTTCCGCCTGACCTGTCGCTTCCTCTCCAT
TCAGTATGGAGATGCAAAGATCCTCACCCCTGCCGTCAAACAGTACGTGG
AAAAGTGCGTGGAGCTCTGCCAACCGGAAAGGGTGCACATCTGTGATGGT
ACTGAGGTCGAGAGCAAGTTGCTCCAGGGCATCATGCTGAAGAAGGGAAC
CATCATTCCTCTGCCGAAGTACGAGAATTGCTGGCTGGCAAGAACCAATC
CGGCGGATGTGGCTAGAGTGGAGGGAAAAACGTTCATCTCAACGGATTCG
AAGGAGCAGACAGTACCGGTTACGGAGAAGGCCACACCGGGAATGCTGGG
TAACTGGATAGCCGAAAAGGACATGCAGGCGGCGATCAAGGAAAGATTCC
CCGGCTGCATGAAAGGTCGCACCATGTATGTTATTCCTTTTAGCATGGGT
CCAGTGGGCTCACCTCTCTCCAAAATCGGAATCGAGATCACAGACTCACC
ATACGTCGTCGAGTCCATGAAGATCATGACTAGGGCGGGCAATCCAGTGC
TTAATTATCTGCAATCTGGGGATGGTCAGTTTGTCAAGTGCCTGCATTCC
GTGGGTACGCCCCAAAAGTGGTGTCCAGGCAATGCCATCCTGGCCCCTGC
GATCCCCGAACGCACTATTGTGCTGCACAAGCCAGCAGAAAAATGAGATT
GTATCTTATGGATCTGGGTATGGTGGTAAACTCCCTGCTGGGCAAGAAGT
GCCTCGCTCTGAGGATTGGCAGCCACCATTGCCAAACGAGAGGGCTGGGC
TGGCCGAGCACATTGTGATACTGGGCATCAACAATCCGCAAGGGAAGAAG
ATCTACATAGCTGCCGCCTTTCATCACTTGCGGTAAGACCAACCTGGCGA
TGATGACTCCTACCCTGCCTGGCTACAAAGTGGAGTGCGTGGGCGATGCA
TCGCCTGGATGAAGTTCGATACCAGGTGTTGCTTGCAAGCGATTAATCCG
GAAGAATGATTTCTTTGGGCTGTGGCGCCGGAAACGTCAGGCCCACATTT
CCATAGCCTAGTAATCCATTCTTCCGATACTCTTGTCTTTTCTGACCGTG
CTCCTTCATACCAAAGGGAT
FMO06278.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10924-RA | 3449 | CG10924-RA | 337..1461 | 9..1140 | 4870 | 96.3 | Plus |
| CG10924-RB | 2019 | CG10924-RB | 67..1157 | 43..1140 | 4700 | 96.2 | Plus |
| CG45087-RA | 2486 | CG45087-RA | 970..1299 | 684..1016 | 540 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18532671..18533676 | 43..1052 | 4370 | 97.7 | Plus |
| 2R | 25286936 | 2R | 18537991..18538229 | 779..1016 | 330 | 79.7 | Plus |
| 2R | 25286936 | 2R | 18537665..18537800 | 445..580 | 320 | 82.4 | Plus |
| 2R | 25286936 | 2R | 18537481..18537533 | 261..313 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:03 has no hits.
FMO06278.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:19:19 Download gff for
FMO06278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10924-RA | 333..1409 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:52:39 Download gff for
FMO06278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10924-RA | 331..1407 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:27 Download gff for
FMO06278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10924-RA | 333..1409 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:27 Download gff for
FMO06278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18532672..18533709 | 44..1088 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:19:19 Download gff for
FMO06278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14420177..14421214 | 44..1088 | 97 | | Plus |
