FMO06280.5prime Sequence
1157 bp (1035 high quality bases) assembled on 2008-09-15
> FMO06280.5prime
CAGTCGACATGTACATTAGGATAGGATTGAATAGTTTGATATCCGTGGTG
ATTGTCATCCTGGTGGCAGTCTATATCTACCGGTATCCGGACGGAAATGC
TGGCAAAAAGAAGGCGTCCAGGAGACCGCCAAATCCGGAGGATCCACTGC
CGCCCTCCAATTCGCCGCTCCATCGATTCTCCCGGGCGGCCATTTGCTCC
GACAGCGATGTGTGCAGCCAATTGGCCAAAAAAGTCCTGGAGAATGGAGG
AAGTGCTGTGGATGGCGCCTTGGCTGCTCTCATTTGCAACGGACTCATCG
GGATGCAGAGCATGGGCATCGGTGGCGGCATGGTGATGAATGTTTATGTG
GCCAAGGAGAACAAATCCTACAGCATTCTGGCCAGGGAAATGGCGCCGCT
GGCATTGCGTGCGGATAACTTCTCGTCATTTCGCGATGAGCAGGATTTCA
AGAGATCCGGATGGTCCATTGCCGTGCCAGCTGAATTGGCCGGTTATGCG
GTGGCCCACCAGAGATTCGGGCGGCTAAAGTGGAAGGATTTGGTGCTGCC
AACTTTGGAATTGTGTCGTCGTGGCTATCGATTGTATAAGCACCAGTATG
ATGCGCTCATACTCAATCAGGACATGATCAGGGCCGATTCCGGCCTACGC
CGGATGTTCATCGATCCCGACACCGGGCGCTTCTGGCCATTGGGTCATCT
CATTCGCCCTGCGGCTCAATTGTGCAACACCTACGATCGGTTGGCCAACG
AGGGACCACTCAGTTTCTACCGCGGATCTATCGCCGATGATCTGCTGGCC
GACTTGAAGGACGCGGGCAGTGCAATAACTAAGGAAGACCTCAACCAAGC
GCACGCCAAATTGAGTAGCGCCATTGTGATGCACTGGATGAGTATGATCT
CCATTTTGACTCCTCCACCTGGAGTGTCACGTTCTCGGCTTCATATGAAC
ATACTAAAGGAGTTCGGGCGAATCTCAGAGCCGGAACTATGGAGCCCCGT
CAAATCCATTTGATGTCGAGGCATGAAGTTTGATTCGTCAAGCGATGCCA
CTGATGATCCCGCAGCGAGAGCTTTTCGATTGACCAGTCATGATGCAATC
CTGCAGCCAATACCACCACACCTTAACCGACAATCTATGGACTCACTGAA
TTAATCT
FMO06280.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1492-RB | 2289 | CG1492-RB | 128..1230 | 9..1093 | 4950 | 97.7 | Plus |
| CG1492-RA | 2000 | CG1492-RA | 128..1230 | 9..1093 | 4950 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12010976..12011934 | 1047..99 | 4170 | 97.8 | Minus |
| X | 23542271 | X | 12011990..12012084 | 103..9 | 460 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:41:35 has no hits.
FMO06280.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:50 Download gff for
FMO06280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1492-RA | 122..1238 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:10 Download gff for
FMO06280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1492-RA | 120..1236 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:29 Download gff for
FMO06280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1492-RA | 122..1238 | 1..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:29 Download gff for
FMO06280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12010948..12011933 | 100..1071 | 97 | <- | Minus |
| X | 12011994..12012088 | 1..99 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:50 Download gff for
FMO06280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11904981..11905966 | 100..1071 | 97 | <- | Minus |
| arm_X | 11906027..11906121 | 1..99 | 95 | | Minus |
