FMO06281.5prime Sequence
1146 bp (1040 high quality bases) assembled on 2008-09-15
> FMO06281.5prime
CAGTCGACATGGACGCCGCTGCCGACGGAGTACCGCCAACGGCGCCAGCT
GCGACGGCGACGACGGCCAACAGTGATCTGGACTTGGCGGCACGTCGGCG
TCTCTTCATCTCACAGCCCTCGACGCTGGCGACGCGCCGCCAGCAGGCGG
TTTGTGTGCGGCGGGCCCACAAAATGTATGGCAGCAGCAAGAACCCCAAC
GTTGTCCTCGACGGCCTGAACATGACAGTGCCCAAGGGTTCCATATATGG
TCTCTTGGGCGCATCTGGATGCGGGAAAACAACGCTGCTCAGCTGCATCG
TCGGACGACGTCGCCTTAATTCTGGCGAGATTTGGGTACTCGGCGGGCGA
CCCGGATCTCGGGGTTCCGGAGTGCCTGGACCCCGGATTGGCTATATGCC
ACAGGAGATAGCCCTTTACGGCGAGTTCACGATGCGTGAGACCTTAATCT
ACTTCGGCATCATTTCTGCCATGTCCAAAGGCGACATCGAGGATCGTACA
GAATTCCTTCTCAAATTACTTAATTTGCCAAATGCCTCCAAATTTGTCAA
GAATCTGAGTGGCGGCCAGCAGCGGCGAGTGAGTCTGGCGGTGGCTCTGC
TCCATGAGCCGGAGCTACTCATCCTGGATGAGCCCACAGTGGGGGTGGAC
CCCGTTTTGCGTCAGAGCATCTGGGATCATTTGGTGGACATTACGAAAAA
TGGTCACACGACTGTGATAATCACCACGCATTACATCGACGAGTGTGCCC
AGGCGCATATGATCGGTCTACTGCGTGGTGGAAAAATGCTGGCAGAGGAA
TCGCCGGACTATCTGCGTCAGCAATATAATGCCGACTCGCTGGAGGATGT
CTTCCTGAGGCTCTCGGTTTTGCAGAACATGGGAAACGCCGCCGATCGTC
GATAGCTCAGGAAAATTGTGGAACAGGTAACGGTGCCGGCGATCTCTAAT
CCCGCCTTGGACATGTCCGATGAGCAGCATGCGCGAAATTTCCGGCGAGG
TTCGGTGACACATTTCAATGTCGTCCGCGCTCGAGATCGATCAGTACACC
GCACCCGCAGCCTCGCTTTGGCACCGGCCCAGAAATACCACATCTTCTGG
TTAATCTTACATGATGCAAGTCGATCACTGCACGCCATATCCTGGA
FMO06281.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33970-RC | 3989 | CG33970-RC | 628..1771 | 5..1136 | 5145 | 97.6 | Plus |
| CG33970-RA | 3387 | CG33970-RA | 628..1771 | 5..1136 | 5145 | 97.6 | Plus |
| CG33970-RB | 2072 | CG33970-RB | 70..456 | 762..1136 | 1375 | 93.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26349599..26349864 | 402..667 | 1330 | 100 | Plus |
| 3R | 32079331 | 3R | 26331404..26331643 | 5..244 | 1185 | 99.6 | Plus |
| 3R | 32079331 | 3R | 26355599..26355904 | 761..1061 | 1080 | 96.1 | Plus |
| 3R | 32079331 | 3R | 26348914..26349074 | 245..405 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 26350078..26350173 | 666..761 | 480 | 100 | Plus |
| 3R | 32079331 | 3R | 28692548..28692742 | 549..743 | 240 | 74.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:56:43 has no hits.
FMO06281.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:31 Download gff for
FMO06281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33970-RA | 625..1711 | 1..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:33 Download gff for
FMO06281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33970-RA | 622..1708 | 1..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:26 Download gff for
FMO06281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33970-RA | 625..1711 | 1..1082 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:26 Download gff for
FMO06281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26331401..26331643 | 1..244 | 98 | -> | Plus |
| 3R | 26348914..26349073 | 245..404 | 100 | -> | Plus |
| 3R | 26349602..26349864 | 405..667 | 100 | -> | Plus |
| 3R | 26350080..26350173 | 668..761 | 100 | -> | Plus |
| 3R | 26355600..26355926 | 762..1082 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:31 Download gff for
FMO06281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22157123..22157365 | 1..244 | 98 | -> | Plus |
| arm_3R | 22174636..22174795 | 245..404 | 100 | -> | Plus |
| arm_3R | 22175324..22175586 | 405..667 | 100 | -> | Plus |
| arm_3R | 22175802..22175895 | 668..761 | 100 | -> | Plus |
| arm_3R | 22181322..22181648 | 762..1082 | 95 | | Plus |
