FMO06282.5prime Sequence
1144 bp (1006 high quality bases) assembled on 2008-09-15
> FMO06282.5prime
CAGTCGACATGACGACAGCCAAATGGATTTGGCGCTTGGCGCTGAGCATC
TTGCTGGTCGTGGGCTTTGTGGCTGCGGAAAAGCCGACTGGCTATCATCG
CGAGATTTGCCAATACCGCAAGGGCAAACATATCCAGCCCATGAGTGTTT
ATCACAATCGCCTGATGGCGATGCGCGAACAAATGCAGATTAGAGCCACG
CTGCAGGGACCGGAGATCTATGGCTACATACTGCCCTCCACGGATGAGCA
TCTCAACCAGGAGGTGGCAGCGCGAGATCAGAGATTGCGATATCTGTCCG
GCTTCTCTGGAGTGCGTGCCTTTGCTGCCGTGACCAGTCACGGAGCAGCC
ATTTGGGTGGAGAACAGATATGCCCAGCAGGCCGATGGAGAGCTGGAGTG
CGACTGGGAGATCTATCTGACCAGCGGGAATGTATCAGTGGCCGACTGGT
TGGGGAGCCATGTTCACATCGACAAGCGAGTGGGTGCCGATCCCCATCTG
GTGCCGCACTCCCTTTGGGTTCAGTGGGAGCGAGAGCTGGAGGACAAGTT
CCTTAAGCTGGTCAGGATCAATACCAATCTGGTGGATCACATTTGGGGCG
ATGAGCGACCGGAGATGCCCAAGAACCAGGTGATAAAAGTGCACGAGAAG
CACTTCGCCGGCGAGAGTTGGCAGGACAAGGTCAAGGAGTTGAGAAGGCG
ACTGGCGCATCTGGGCTGCGATGCCATGGTGGTCACTTCGCTCACCGAGA
TTGCCTACTTGCTAAACATTCGGGGCACAGACATTCCGTATACTCCTGTG
ATTAAGTCATACGCCGTGATCAGTCGGGATGATATATTCTTCTATGTGGA
CCACTCAAAGATTAGTCTGGGCATTGACCTTCATCTCCGCCACAGACTGC
TTCAATGAAAACTGCGTGAAAATCAAGAGTACATCAGATCTGGAGTGACA
TTCGTACCTATGCTAGATCTGGAGCGCGTCCTTGTACCCGCTCCTTGTGT
ACAAGGATCTGAGCGTCGAAGCGAATACACCTTCCATGCCAGGCAAATTG
TCGTCTGGGAAATCTCACCCATTATCTTTATGGCGGCCAGAAAAACTCCG
ATGAAAAGGCCCGGATAGAAAGCACCACTCCGGATGTGGCGCGC
FMO06282.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6225-RB | 2952 | CG6225-RB | 474..1583 | 9..1111 | 5160 | 98.3 | Plus |
| CG6225-RA | 2726 | CG6225-RA | 248..1357 | 9..1111 | 5160 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12658272..12658946 | 132..806 | 3375 | 100 | Plus |
| 3R | 32079331 | 3R | 12659002..12659116 | 805..920 | 515 | 98.3 | Plus |
| 3R | 32079331 | 3R | 12659184..12659368 | 933..1111 | 415 | 90.3 | Plus |
| 3R | 32079331 | 3R | 12658136..12658210 | 57..131 | 375 | 100 | Plus |
| 3R | 32079331 | 3R | 12656854..12656902 | 9..57 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:56:12 has no hits.
FMO06282.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:57 Download gff for
FMO06282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6225-RA | 248..1367 | 9..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:04 Download gff for
FMO06282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6225-RB | 474..1593 | 9..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:05 Download gff for
FMO06282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6225-RA | 248..1367 | 9..1120 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:05 Download gff for
FMO06282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12656854..12656902 | 9..57 | 100 | -> | Plus |
| 3R | 12658137..12658210 | 58..131 | 100 | -> | Plus |
| 3R | 12658272..12658946 | 132..806 | 100 | -> | Plus |
| 3R | 12659004..12659116 | 807..920 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:57 Download gff for
FMO06282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8482576..8482624 | 9..57 | 100 | -> | Plus |
| arm_3R | 8483859..8483932 | 58..131 | 100 | -> | Plus |
| arm_3R | 8483994..8484668 | 132..806 | 100 | -> | Plus |
| arm_3R | 8484726..8484838 | 807..920 | 98 | -> | Plus |
