FMO06284.5prime Sequence
1148 bp (1039 high quality bases) assembled on 2008-09-15
> FMO06284.5prime
CAGTCGACATGGCGGGTCAAAAGTTTCAGTATGATGAGAGCGGCGGAACG
TTCTACTACTTTGTGTTATCGTTCTTGGCGCTAATATTGATACCGACCAC
CATTTACTATTGGCCACGTAAAAAGAAACAAGATAACAGCAAACTTAAAG
AGGAATGTCAGTGCGCCGACTGCCAGAAAAAGAAGACCATCTTGGCCAAT
GCCGAGCCGTACAGAGCTCTCACGTCATGGACCATCAAGCTGACCATAGT
GCTGGGGTGGGCCCTACTGCTCTTCCTCACGTACCGCGTCTCGCAGTTCG
ACTACGAGATGGCCAGCTTCGATCCCTTCGAGATCCTGAATGTGCCGCCG
ACGTCGTCGCAGGCCGAGATCAAGAAGGCCTACTACCGGCTGTCCAAGGT
GCTCCATCCCGACAAGGAGACGGGTGACGAGAAGTCCTTCATGATGCTGA
GCAAAGCGTACCAGGCGCTGACCGACGATGTGGCAAAGGAGAACTACGAG
AAGTATGGTAATCCGGATGGACCGGGTGCCATGTCCTTTGGCATCGCCCT
GCCCTCGTGGATTGTGGAGAAGGAGAATAGCGTTTGGGTTTTGGGTCTGT
ACGGCCTGGTCTTCATGGTGGCCATGCCCTCGGCAGTGGGTGTTTGGTGG
TACCGCTCCATCCGCTTCAGTGGCGACAAAGTGCTGCTCGATACCACTCA
GATGTACTTTTACTTCATCCACAAGACACCGCACATGCTGCTCAAGCGGG
CACTTATGGTTCTGGCAGCCAGTTTGGAGTTTGACAAGCGACACAACTCG
CAGGTCCAGGAGCGGCAGTCGGACAATGACGAGGTGCCGGCGCTGATTAG
ACAGCTGCCCAATCTGAATGAGAAGTGCAAGGAGCATCCGCTGTGCCGCA
TGTACTCCATCAAGGCTCGCGCCATCCTGCATGCCCATCTCAGTCGCATG
CCCCTCAATCCGGAAACTCTTGGGCGCGATCGCCAGTTTGTGGTGAGAAG
TGCCCGTATTTGTGCAAGAAAATGGTCTCTTGCGTTCACAGCTGTCATGA
TGGCCCTATGCCCGACGTGTGCCCCGCTTGCAGCATCGAAACGATTGAAA
CTGCATGAAATGGTCCCCGAAGAATATCCAGCCTGGGAATTTCAATCC
FMO06284.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec63-RA | 2944 | CG8583-RA | 348..1474 | 9..1130 | 5295 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7361742..7362457 | 131..846 | 3565 | 99.9 | Plus |
| 3L | 28110227 | 3L | 7362521..7362814 | 842..1130 | 935 | 92.5 | Plus |
| 3L | 28110227 | 3L | 7360908..7361035 | 9..136 | 625 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:42:27 has no hits.
FMO06284.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:20 Download gff for
FMO06284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec63-RA | 339..1474 | 1..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:08 Download gff for
FMO06284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec63-RA | 337..1472 | 1..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:58 Download gff for
FMO06284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec63-RA | 339..1474 | 1..1130 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:58 Download gff for
FMO06284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7360899..7361031 | 1..132 | 97 | -> | Plus |
| 3L | 7361744..7362453 | 133..842 | 100 | -> | Plus |
| 3L | 7362522..7362814 | 843..1130 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:20 Download gff for
FMO06284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7353999..7354131 | 1..132 | 97 | -> | Plus |
| arm_3L | 7354844..7355553 | 133..842 | 100 | -> | Plus |
| arm_3L | 7355622..7355914 | 843..1130 | 93 | | Plus |
