FMO06285.5prime Sequence
1130 bp (1007 high quality bases) assembled on 2008-09-15
> FMO06285.5prime
CAGTCGACATGTTGACCCTGTATTACGTGAGTGCCACCGTCCTGCAGTCC
TGGCGCATTCAAAAGGCGTGCTCCAAGATCGCCGAGCACCTCGCGCAGCC
CTCGAGCATCGCCTTCTATACCCTCCAATCGGGCAGCGATGACGGATTCG
ATCCCGCCCTGGCCAGCTCGGAGTTGTGCTGCAATCGGAACGCGGCCAAG
GTCACGGACATCCTGTGGCTGCACGCCAACCAGCGGGGTTGCTGCCTGCG
TCCGCTGCAAACGCTACACATCACGCCTTGGATCAGCTTTCCGCCGGCGC
CCAGTCTGCTTCCCTTCTCCTATGCCGCCGACACGTTAACGCCGGCGTCC
ACGCCCACGGAGGCGGACGTCCCGCGCCAACAACGGGTTTCGCTCTCTGC
CCAAGGGGAGGAGCGGATGCAGCTGCTCCTTGAGGCCGACATAGAGCCAC
TACAGCGGCCCAGCTCCGAGGACACATCAGCAGTACGGCTGGAAGATTAC
GGTAAGCTAATTGCTTGGAAAATAGATTCCCACCTGGCGGTGCTCATCGA
AACAGACGTCGAGCACTTCACGAAACTTTTGATAACGACTTTCTTGAGAA
ATAATTTATGCATTAACGATCAGCTGCCACTTTTGCGGATTGAGTCGGTG
CAACGGGAAGGGGATCCGCAGCCCTTTGAGCTTCTGGCCAAGCATCTGAA
GCGGCAATCCCGCATAAGCGTCGGTCTGGACAAGGATGGATGGAAGAAGC
ACATGGAGGACTTGCGTGCCGTAGTGTGCTGGCGCACCAGGCCACCGAGT
TCGAGTACCAGAGGAATCGCTCTGAGGGAAGAACGAAATCGGATCCCACC
ACACATGATCAACGCCCGACTTCGGAGCTTTTGGCCAGGCTGTGGCCGTG
GTGGAGCCCACAACAGGGCATATCTGTCTCCGGCAGGACGAAAGAAGGCC
TCGCTTCAAAGCCGAGGCCAAGGACGTCAACTAAACCTTTTCCGACTAGA
GCGATGCCAACCGGCACTCTTTGCCAGAGCGAGGTCCGCAGCTCAGCAAG
AGACTCCAGTTACGCCACTAGTGCATTAGACAAGCGACTAGAGAAACTAG
CGCTGTCAGGGCACGCCACGCAGCGAGAAA
FMO06285.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hcs-RC | 3991 | CG14670-RC | 362..1483 | 9..1107 | 4845 | 96.8 | Plus |
| Hcs-RA | 3973 | CG14670-RA | 362..1483 | 9..1107 | 4845 | 96.8 | Plus |
| Hcs-RD | 3847 | CG14670-RD | 362..854 | 9..501 | 2465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5475462..5475800 | 150..488 | 1695 | 100 | Plus |
| 3R | 32079331 | 3R | 5476541..5476936 | 646..1034 | 1390 | 95.2 | Plus |
| 3R | 32079331 | 3R | 5476305..5476462 | 488..645 | 790 | 100 | Plus |
| 3R | 32079331 | 3R | 5475260..5475401 | 9..150 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:32 has no hits.
FMO06285.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:19 Download gff for
FMO06285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcs-RA | 357..1355 | 1..998 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:52:46 Download gff for
FMO06285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14670-RA | 354..1352 | 1..998 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:00 Download gff for
FMO06285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcs-RA | 357..1355 | 1..998 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:00 Download gff for
FMO06285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5475255..5475401 | 1..150 | 97 | -> | Plus |
| 3R | 5475463..5475800 | 151..488 | 100 | -> | Plus |
| 3R | 5476306..5476462 | 489..645 | 100 | -> | Plus |
| 3R | 5476541..5476897 | 646..998 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:19 Download gff for
FMO06285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1300977..1301123 | 1..150 | 97 | -> | Plus |
| arm_3R | 1301185..1301522 | 151..488 | 100 | -> | Plus |
| arm_3R | 1302028..1302184 | 489..645 | 100 | -> | Plus |
| arm_3R | 1302263..1302619 | 646..998 | 96 | == | Plus |
