FMO06286.5prime Sequence
1145 bp (1009 high quality bases) assembled on 2008-09-15
> FMO06286.5prime
CAGTCGACATGAGCAGCGGAATGAGGTCGCAGGACGGTCCACGGGCGAAG
GTCAATGCCGCCAGTACGCTGCTCACCCAGGAGGAGAATGAGGCCGTCTT
CAAGCTGCTGGGCAAGAAGTGCCAGACACTCAACACCGCCGTGGTGCAGA
TCTACAAGACGGAGGGCAGCGCCCATGCCCACTGGAAGAAGCGACACACC
GGGGTGGTGTGCTTCGTCAAGGATAGCGCCATCCGATCCTATTTCATGCG
CGCCTACTGCCTGATCAAGAACGAGCTAATCTGGGAGCACGAGATCTACG
ATGGCATGGAGGTGGTCAAGTCGCGACCCTTTCTGCTTACCTTCGAGGGC
AGTGATGGTCATGTGGGACTAAACTTCGTGTCCGAGGAGGAGTGCGACTC
CTTCTTCCGCATTGTGGACGCCACCATAGAGACGCGTAACCGCAAACGAC
AAGAGAAACGCAACCGGCAGAAAAGCCAACAGGCGCCCAATGCTCCATTG
CCTCAGGTGCAGCGGGAGCCGGCCAGGCCACCACCCATGCAAGGTGGGTT
GTCCTCCACGGACGGCGTTCAGCTGAGGAACAACAAGATCAACTCGGTGA
CACTGACGCCTGCACCAGCGCCAGCGCAGTCGAAGAATTTCCTATCCAGT
AGCTTTGGTCTGGGCAACAATGCGAAGGACAAGAAGCGCAAGGTGACCAA
GGCGGACATCAGCCGGCCGACAAACTTTGTACACCTCAGCCACGTGGGCT
GGGATGCGCAGAAGGGATTTGATCTGGCGGGCAACGAGAACGACGAAGTG
CTGAACGAGTTCTTTCGTGAAGGCAGGTGTCTCGGAAGTGGAGCTAAAAG
ATCGGGACACCCCGCGCCTTCATCTACGACTTCATACAGAGCACCATGTC
CTGGCTTCGGTGAAGCATACAGTGTAGAATCCCCTTACGGAAACAGCGGC
TCCCATGCCACCACCGGTGCCAACCCGTATCATCTAATGGCAACAAGAAC
TGCTCTTCCGCTGCGCCGCAAGACAACCACCGCCCGCAGTTCCCGTTTAC
TGGCGGGCGCCGCACGAGCTCTCCACCACTTACGAACACCACCAATTACA
CGTCACACGGATAGTCAGTGCCCTGTTTGTGGCCGCCACTCACAC
FMO06286.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| WASp-RD | 2734 | CG1520-RD | 207..1305 | 9..1098 | 5025 | 98 | Plus |
| WASp-RB | 2682 | CG1520-RB | 155..1253 | 9..1098 | 5025 | 98 | Plus |
| WASp-RA | 2794 | CG1520-RA | 267..1365 | 9..1098 | 5025 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28826251..28826874 | 978..354 | 2870 | 99 | Minus |
| 3R | 32079331 | 3R | 28826946..28827177 | 354..123 | 1160 | 100 | Minus |
| 3R | 32079331 | 3R | 28830502..28830618 | 125..9 | 585 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 7852..7919 | 569..635 | 130 | 67.6 | Plus |
FMO06286.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:16 Download gff for
FMO06286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| WASp-RA | 259..1360 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:52:49 Download gff for
FMO06286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| WASp-RB | 147..1248 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:54 Download gff for
FMO06286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| WASp-RA | 259..1360 | 1..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:54 Download gff for
FMO06286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28826084..28826174 | 986..1071 | 91 | <- | Minus |
| 3R | 28826242..28826874 | 354..985 | 98 | <- | Minus |
| 3R | 28826947..28827174 | 126..353 | 100 | <- | Minus |
| 3R | 28830502..28830625 | 1..125 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:16 Download gff for
FMO06286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24656224..24656347 | 1..125 | 96 | | Minus |
| arm_3R | 24651806..24651896 | 986..1071 | 91 | <- | Minus |
| arm_3R | 24651964..24652596 | 354..985 | 98 | <- | Minus |
| arm_3R | 24652669..24652896 | 126..353 | 100 | <- | Minus |
