FMO06288.5prime Sequence
457 bp (447 high quality bases) assembled on 2008-09-15
> FMO06288.5prime
TCCAATCAGGAGAGCAACAGCATCTTCCGCAGCGAGGTGATGTCCTTGGT
GCAAATGTATCTGCAGCCGGAGGCAGCCTACGATACGATTGCCGCCTTGG
GCGAGGTGGGATGTGTTCAGTTCCGTGATTTGAATGCGAAAATAAACGCT
CAGCAGCGAAAATTTATTGGCGAGGTGAGACGCTGCGATGAACTGGAGCG
CCGGATCCGCTACGTAACCGCTGAGTTGAACAAGGAGGGTCACAAGGTGC
TCGATCTAATGGATGACTTCCCACCGGCTCCTCAGCCACGTGAGATTATT
GACTTGGAGTTGCATCTGGAGAAAACAGAGACAGAGATCTTGGAGCTGGC
TGCCAACAATGTGAACCTCCAGACCAGCTACTTGGAGCTGAGCGAGATGA
TCCAAGTGCTGGAGCGTACCGATCAATTCTTTTCGGACCAGGAGTCGCAC
AACTTCT
FMO06288.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-4-RA | 2728 | CG7678-RA | 112..567 | 1..456 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18389120..18389446 | 456..130 | 1635 | 100 | Minus |
| 3R | 32079331 | 3R | 18389566..18389694 | 129..1 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:21:47 has no hits.
FMO06288.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:13 Download gff for
FMO06288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-4-RA | 110..565 | 1..457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:52:52 Download gff for
FMO06288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7678-RA | 110..565 | 1..457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:07 Download gff for
FMO06288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-4-RA | 112..567 | 1..457 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:07 Download gff for
FMO06288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18389119..18389446 | 130..457 | 99 | <- | Minus |
| 3R | 18389566..18389694 | 1..129 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:13 Download gff for
FMO06288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14214841..14215168 | 130..457 | 99 | <- | Minus |
| arm_3R | 14215288..14215416 | 1..129 | 100 | | Minus |
