FMO06290.5prime Sequence
1169 bp (1025 high quality bases) assembled on 2008-09-15
> FMO06290.5prime
ATTATAAGAAGTTATCAGTCGACATGCAGTCAACCCAAAGTAAGAGTGAT
CGATCTTCGATGCACAGGGGCCCTCTACTTCTCTGCGCCGTGATGGTCGT
CCTGGTGACTTTGCCTGAACAGATAAATGCTCGTATGGCATTTGAAAAGC
TAACGGACTTTGATTTTCCGGGCAACACGTATTACAGCGTGAAAAACCTT
TCACTGTATGAGTGTCAAGGATGGTGTCGCGAGGAGGCAGATTGCCAAGC
GGCGGCCTTTAGTTTTGTGGTTAACCCTCTGTCGCCTTCGCAAGAGACCC
ACTGTCAATTGCAGAACGACTCCTCCGCAGCCAATCCTTCGGCAGCTCCG
CAAAGAAGCGCAAACATGTACTACATGATAAAATTGCAGCTGCGCAGCGA
GAATGTGTGCCACCGACCGTGGAGTTTCGAGAGGGTTCCAAACAAGGTGA
TCCGCGGCCTGGACAATGCACTAATATACACCAGTACAAAAGAGGCCTGC
TTATCAGCTTGCCTCAACGAAAGACGATTCGTATGCCGATCTGTGGAGTA
TGATTATAACAACATGAAGTGTGTGCTCAGTGATTCGGATAGACGCAGCT
CTGGACAGTTTGTTCAACTAGTGGATGCTCAGGGTACGGATTACTTTGAG
AATTTGTGTTTAAAGCCGGCTCAGGCCTGTAAGAATAACCGTTCGTTTGG
CAATTCCCAAAAAATGGGGGTCTCCGAAGAGAAGGTTGCCCAATACGTTG
GTCTGCACTACTATACTGACAAGGAACTCCAAGTGACCTCAGAATCCGCC
TGCCGTTTGGCATGTGAAATTGAATCTGAGTTCCTGTGCCGCTCCTTCCT
GTACCTGGGTCACCCCAAGGATCCCAGTACAACTGTAGGCTATATCATTT
GGATCATAAGACCCTGCCCGATGGTCCATCCACCTATTTGAACCATGAGC
GCCCACTGATCGATCATGGAGAGCCCATTGTCAGTACTTGAAACCAGTGC
GAGAAGCCGCCGTTTGGGGAGCTGATCACCACGGCACTCTGATAAATCGA
ATACTCCTACCGTTAGCCTAAACACCAATGAAGATCCAACCTGAACAAAC
TAACCGCATGACGTTAACTTGGACAAGAACGGCACTGCCTATGAGTTTTC
GTTTAATGCAAGGACACTT
FMO06290.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tyn-RF | 3612 | CG17131-RF | 765..1922 | 24..1168 | 5100 | 96.9 | Plus |
| tyn-RE | 3541 | CG17131-RE | 694..1851 | 24..1168 | 5100 | 96.9 | Plus |
| tyn-RD | 3521 | CG17131-RD | 674..1831 | 24..1168 | 5100 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 196281..197413 | 24..1144 | 4795 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:32:43 has no hits.
FMO06290.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:15 Download gff for
FMO06290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tyn-RB | 433..1596 | 14..1169 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:52:56 Download gff for
FMO06290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP71-RA | 366..1539 | 9..1169 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:11 Download gff for
FMO06290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tyn-RD | 668..1831 | 14..1169 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:11 Download gff for
FMO06290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 196269..197407 | 12..1137 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:15 Download gff for
FMO06290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 93273..94411 | 12..1137 | 97 | <- | Plus |
