FMO06293.5prime Sequence
1157 bp (1055 high quality bases) assembled on 2008-09-15
> FMO06293.5prime
CAGTCGACATGCGGATCGAACCTGGGGACTCCTTTTGGACGAAAAAGGCG
ATGTTTTCCAACGCAGAAAGGCAGTACTTTGAGACGGTCCGTCCGCGGAA
GACCAGTCTTCCGGGCTCCACCGCGCCCAACATAGCCGCTCCGGTAACAA
AGGCCACGAAGAAGAATAAGACGATGGCCGAGATGATGCCAAACAAACTG
CTTTACATGAATCCGCTTACCATGGAGGCACACTTCTTTCTGCAGACCCT
AAACTCAGTGAACCAGACGACGAATCCGCCGCAGCTAGACCCGCACCTGG
CCAACCTGCTGGAGCGCATTATGGTGGGCATCGAGAGCTACTTGGACAGG
AATCCCACATACGTTTTGCCGCAGGAGATGGCCGCACCGGGTGAGGGCGT
GGCCTTCGTCCAGCCCCAGGAGCTGCAGACAATAAAGCGAACATTCAGCT
GTAGTTCCTGCAGCAACCGCATAGTGGGCACCACCATCGCAAAAGCTGTG
GCCCACCTTTCGGAGCAGCATCCAAAACCCAATCCCAACAATCAGCCAGT
CCAGCCGCATCCGACGCATCAGACGAAACAGGAGAAAAAGCAGGCCCAGG
TGAAGGCTCGTCAGCATATAACAGTACGGCTACCCAAGAAGGCCAGGGCA
ATGATTGTGGGAGAGATTACGAATGTGTTTAAGGACAAATACCCAATAGC
GGACAAGTTAAAGGTGATTCCCGAGTACGACGTTATCGAACAGGACCTGT
GCAAGCTTTTGTCGCCGGGCTTTCCCAAACAACCACTGCGAGTCTACAAG
TTCGGGTCCCGCATCACAGGCATTGGAAATCGATCCTCGGACCTGGACCT
CTTCGTCGACATCGGCAACACATTTCACACGTTCGAGCATCGAGCTTCCA
CGCTACCGTCGCCAAGCTGCGGGCTATGAAGGAAGTTCTTCTGCGACAGC
GAGGACTGCGTCTTATTAATTTCATCGAACAGGCTCGCGTGCCCATCATC
AAGACGTTGCACTTACCACCGTATTCGAGTGCGACATTTGTCTTGAACAG
CATGGGCTTTTGCAAAACAATCTGCTCAATACTATTTGGTCCAGCCTGAC
TCATAATGTGGCATATATATGTAGGACTGCCTGACCCCGCAAGCTACTGA
ACAAATC
FMO06293.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1091-RB | 1943 | CG1091-RB | 103..1263 | 8..1156 | 5185 | 97.4 | Plus |
| CG1091-RC | 1952 | CG1091-RC | 103..1272 | 8..1156 | 5085 | 96.7 | Plus |
| CG1091-RA | 1792 | CG1091-RA | 52..1112 | 108..1156 | 4685 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7084925..7085357 | 639..207 | 2165 | 100 | Minus |
| 3R | 32079331 | 3R | 7084542..7084767 | 865..640 | 1130 | 100 | Minus |
| 3R | 32079331 | 3R | 7085410..7085512 | 210..108 | 500 | 99 | Minus |
| 3R | 32079331 | 3R | 7085882..7085981 | 107..8 | 500 | 100 | Minus |
| 3R | 32079331 | 3R | 7084375..7084482 | 970..864 | 395 | 97.2 | Minus |
| 3R | 32079331 | 3R | 7084219..7084318 | 1070..971 | 315 | 92.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:03:19 has no hits.
FMO06293.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:24 Download gff for
FMO06293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1091-RB | 97..1191 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:01 Download gff for
FMO06293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1091-RB | 103..1197 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:54 Download gff for
FMO06293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1091-RB | 97..1191 | 1..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:54 Download gff for
FMO06293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7084194..7084318 | 971..1091 | 91 | <- | Minus |
| 3R | 7084375..7084481 | 865..970 | 97 | <- | Minus |
| 3R | 7084543..7084767 | 640..864 | 100 | <- | Minus |
| 3R | 7084925..7085357 | 207..639 | 100 | <- | Minus |
| 3R | 7085414..7085512 | 108..206 | 100 | <- | Minus |
| 3R | 7085882..7085987 | 1..107 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:24 Download gff for
FMO06293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2909916..2910040 | 971..1091 | 91 | <- | Minus |
| arm_3R | 2910097..2910203 | 865..970 | 97 | <- | Minus |
| arm_3R | 2910265..2910489 | 640..864 | 100 | <- | Minus |
| arm_3R | 2910647..2911079 | 207..639 | 100 | <- | Minus |
| arm_3R | 2911136..2911234 | 108..206 | 100 | <- | Minus |
| arm_3R | 2911604..2911709 | 1..107 | 97 | | Minus |
