FMO06294.5prime Sequence
1130 bp (976 high quality bases) assembled on 2008-09-15
> FMO06294.5prime
CAGTCGACATGGACATCCTAATCTTTGTGACGGCGGCGGCCCATTTGGTC
TACACGCCCTTTACGAAAGTGGAGGAGAGCTTCAATCTCCAGGCCATGCA
CGACATTCTTTATCTGCGAAACAACTTTACGCAGTACGATCACCATGACT
ATCCGGGCGTGGTTCCACGCACCTTCATCGGCCCATTGGTGGTGTCCATT
ATCTCTGCCCCGTTTGTCCTGCTCTTCGAGACCCTTAACATCAACAAGTT
CTGGGCCCAATATGTAGTGCGCCTTGTCTTGGCTGGGGCCATCTCTGTGG
CCTGGAACAGCCTACGGCAGGCGGTGACAAAGATTTACGGAGTTGAGGTC
CGCCTGTGGTTCACAGCCATCACTATTACGCAGTTCCACTTCATGTTCTA
CATGACTAGGCCTCTGCCCAATATCTTTGCCCTGCCGATAGTGCTCTTTG
CCATTGCCTATTGGCTACGCGACCAGCACAAGCCATTCATCATCTGCTCT
GGTATATCCATTCTCGTCTTTCGATCCGAGTTGGCGTTATTTTTGGGTAT
TTTGCTGGTGGTGAGCCTCCTACGGCGAAAAGTTTCCATTGACGGGCTAC
TCAAAGTTGCACTGCCGGCGGGCGTCTGCATTTTGGCTGCCACAGTGCTG
GTGGACTCGTTCTTTTGGCGCCGCCTGCTTTGGCCCGAGGGTGAGGTGCT
ATGGTACAACACCGTACTCAATAAGAGCTCCAACTGGGGTACCTCGCCTT
TTCTATGGTACTTTTACTCCGCCCTGCCACGTGCCATGGGTGCATCGCTG
GTGCTCGTGCCAATCGGCGTCGCATTGGAGCCACGTATTCGGCCATTGGT
CCTGTCGGCTCTCCTCTTTGTCCTTTTGTACTCCATTCTGCCGCACAAGG
AGCTGCGCTTCATCATCTACGAATTTCAAGATCTCATCATTGCTGCGCTA
GCGCATGCCAACGAATTTGGATGAACAGCGCCAGTCAACGTTGCATAACC
TTTCTGGCGCTCGCCTGTGGAGCCATCTCTGCTAATGTCTTTATACCGTC
TTCTTGCTTGTCATTCGAAGCAACTATCGGGCGGAACATCCTCTCCGAAT
GCCATCGCTGAGCTGGCACCTAAACGTTTC
FMO06294.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8412-RA | 2527 | CG8412-RA | 387..1524 | 7..1130 | 5000 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9757702..9758074 | 595..966 | 1710 | 97.9 | Plus |
| 3R | 32079331 | 3R | 9757253..9757429 | 265..441 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 9757494..9757650 | 440..596 | 785 | 100 | Plus |
| 3R | 32079331 | 3R | 9757062..9757197 | 132..267 | 650 | 98.5 | Plus |
| 3R | 32079331 | 3R | 9756877..9757004 | 7..134 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:52 has no hits.
FMO06294.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:34 Download gff for
FMO06294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8412-RA | 382..1450 | 1..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:53:15 Download gff for
FMO06294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8412-RA | 380..1448 | 1..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:11 Download gff for
FMO06294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8412-RA | 382..1450 | 1..1065 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:11 Download gff for
FMO06294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9757496..9757649 | 442..595 | 100 | -> | Plus |
| 3R | 9757703..9758074 | 596..966 | 97 | -> | Plus |
| 3R | 9758134..9758199 | 967..1030 | 91 | -> | Plus |
| 3R | 9756872..9757004 | 1..134 | 97 | -> | Plus |
| 3R | 9757065..9757197 | 135..267 | 98 | -> | Plus |
| 3R | 9757256..9757429 | 268..441 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:34 Download gff for
FMO06294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5583218..5583371 | 442..595 | 100 | -> | Plus |
| arm_3R | 5582594..5582726 | 1..134 | 97 | -> | Plus |
| arm_3R | 5582787..5582919 | 135..267 | 98 | -> | Plus |
| arm_3R | 5582978..5583151 | 268..441 | 100 | -> | Plus |
| arm_3R | 5583425..5583796 | 596..966 | 97 | -> | Plus |
| arm_3R | 5583856..5583921 | 967..1030 | 91 | -> | Plus |
