FMO06295.5prime Sequence
692 bp (143 high quality bases) assembled on 2008-09-15
> FMO06295.5prime
CAATCCACCATGCGTGCCCTCATTATTCTGAGCATTGTGGCAGCGGCAAG
TGCCGGTAGCTTGTCCGGATATAATTACGGACAAGGTGCGACAACCAGTA
TTGGGGGCAGTGGTGTATCCCCAGTCCCTGCACTGGCGGGACCAGTTAGC
TATAGTGCCGCTCCCCAGGCGTCAGTTCACAAGGAGTTCTACTGCTTCTA
TGCCAACGATGACGACTTCGAGGATAAGGCTGCTCTCCAGAGGGCTCTTG
CCTCGGTCAAGAAGAACATTCGCGTCATCTTCCTCAAGTCACCGGATAAC
CGTGGCTACGAGAATGCCGTTTTGGCCCTGGCTAAACAGGCGGCCCACCA
GCAGACTGCCATATATGTGCTGCACAAACAGACTGATATCAACGAGCTGG
CCCATAAATTCAATGCCGTGCGCCAGAATGCCAACAAGAAGCCCGAGGTG
CACTTCGTCAAGTACAGGACACCTGAGGATGCTGCCAATGACCAGCAGGC
AATCCAATCTCATTACGATCAACTCGGCGGCTCCAGCCAGTCCATCAACG
GTGGCGTGGCTAATGCCATCAACTTTGCATCCCAGGGAGCTGCTCCAGCA
CGCGTTACTCCTCAACAGGTGCCCCATAGCAACTACCTACCCGCCAACAT
CCTGAGTTCCCTGCGTCACTCAATCTTTCTACATCATGCGTG
FMO06295.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlP-RA | 757 | CG14240-RA | 41..701 | 10..670 | 3095 | 97.9 | Plus |
| TwdlO-RA | 807 | CG6452-RA | 309..620 | 271..582 | 555 | 78.5 | Plus |
| TwdlM-RA | 1030 | CG5468-RA | 527..810 | 271..554 | 385 | 76.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26620664..26621324 | 670..10 | 3095 | 97.9 | Minus |
| 3R | 32079331 | 3R | 26626119..26626430 | 582..271 | 555 | 78.5 | Minus |
| 3R | 32079331 | 3R | 26619721..26620004 | 271..554 | 385 | 75.7 | Plus |
| 3R | 32079331 | 3R | 26632462..26632770 | 274..582 | 375 | 74.8 | Plus |
| 3R | 32079331 | 3R | 26622700..26622963 | 534..271 | 360 | 75.8 | Minus |
| 3R | 32079331 | 3R | 26624784..26625073 | 560..271 | 355 | 74.8 | Minus |
| 3R | 32079331 | 3R | 26628090..26628323 | 543..310 | 345 | 76.5 | Minus |
| 3R | 32079331 | 3R | 26630310..26630560 | 271..521 | 325 | 75.3 | Plus |
Blast to na_te.dros performed 2014-11-28 21:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 2863..2921 | 575..633 | 106 | 64.4 | Plus |
FMO06295.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:10 Download gff for
FMO06295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlP-RA | 37..701 | 6..670 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:52:43 Download gff for
FMO06295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlP-RA | 33..697 | 6..670 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:29 Download gff for
FMO06295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlP-RA | 37..701 | 6..670 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:29 Download gff for
FMO06295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26620664..26621328 | 6..670 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:10 Download gff for
FMO06295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22446386..22447050 | 6..670 | 97 | | Minus |
