FMO06301.5prime Sequence
1145 bp (1006 high quality bases) assembled on 2008-09-15
> FMO06301.5prime
CAGTCGACATGTTCCAAGTCCTGCCCCGTCCGTCAAGATCCACGTTCCAC
TGCATAGCGGCAGCCGTTGTCACAGTCGTCCTAATGTCATGGGCCCGACC
GCTGGGCGTGCTATTCCTGGGACTACTTGGCTACTGGATCTACTGGACGC
GCTGCAGCTTCCGCGTTGTGCCTACGGACGAGCTGCGCGGCAAGATCAAC
ACCTGGCTGCAGAGGATCGACGACTGGCGCCACCGCAGTCCCAGCATGTT
CTGCTTGGCCAGCAGCGGTTGCTTGGGCACCCTCGCAGTGCTCGGTCACC
TTATATCCGGATCAACGCTGGTACTGACCATCCTGGTCGTCTCCGCACTA
GTCTCCACCAAGTACACCTTCAAGCTGCTGAAGATCGAGCACAGGGACTT
TCAGTGGTCGGAGAAGCTGAACTACAACAACTTGGAAGCCGAGGCAGAGG
ATGAGTTCCTGCCGGACGTGAACGAGTCGAATCTGTTTGTGTTGGAGCGG
GCCAGCGATGTGGCCACCATAAGTTCGCCCACCGATGCGAATGATGAGGA
CGATGACGATCGCAGCGACGACGTACCGTCGGAGCTCCTCATTCCGGATG
CGATACCCGAGATTGACGAGCAATCCACCGACGAGGACGATGAACTAGCC
CCGCTGGCGCCCAAGAGGCAGGAGAAGCTGCAGCCACAGGAGCAGCCGGC
CAAGGAGAGCGAGGATATGAACTTCCGAAAGAGTCACTTCAAGCGTGACT
CGTCGCTGTCCACATCCTCCTCGTCGGAGGAAAGCCTGTCAAAGGGGCTG
CAGTTCCCCGATCACACCACCGTAGATGCCACTGGCAACCTCAGTTGCGT
CAAATAACCGCTGGCCCGGATCCCGCCGGCGAGCTTGTAGCCCTGGCCGT
GAAACGCAGCTCAAGCGCTCCTGGCAAACACCGGAAGCTCCTGCCCAGCC
TTGTTACCGGCCTGGTGCATGGGGAGCAGTGTGCTGCTGCAGCCGGTGCA
GCGATTGCACGAATCAATCAAGAATCGGTGACAGCAGCGCATTGTCACGC
CCTGGATCGTCGGACGAAAAGCGATTTGAATACTCGAATCGGAATGACTT
TAAGGCTAGCTTTCCAGACCATTCGTTGCGCGCGGGGCCGAGAGT
FMO06301.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12576-RE | 2404 | CG12576-RE | 415..1521 | 9..1104 | 4990 | 97.7 | Plus |
| CG12576-RF | 2547 | CG12576-RF | 558..1664 | 9..1104 | 4990 | 97.7 | Plus |
| CG12576-RA | 2407 | CG12576-RA | 418..1524 | 9..1104 | 4990 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22475830..22476453 | 1011..396 | 2695 | 98.1 | Minus |
| X | 23542271 | X | 22477179..22477484 | 396..91 | 1530 | 100 | Minus |
| X | 23542271 | X | 22480511..22480594 | 92..9 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:27:45 has no hits.
FMO06301.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:32 Download gff for
FMO06301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12576-RA | 410..1532 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:59 Download gff for
FMO06301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12576-RA | 470..1592 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:30 Download gff for
FMO06301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12576-RA | 410..1532 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:30 Download gff for
FMO06301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22475726..22476452 | 397..1112 | 96 | <- | Minus |
| X | 22477179..22477483 | 92..396 | 100 | <- | Minus |
| X | 22480512..22480602 | 1..91 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:32 Download gff for
FMO06301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21877562..21878288 | 397..1112 | 96 | <- | Minus |
| arm_X | 21879015..21879319 | 92..396 | 100 | <- | Minus |
| arm_X | 21882348..21882438 | 1..91 | 95 | | Minus |
