Clone FMO06302 Report

Search the DGRC for FMO06302

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:63
Well:2
Vector:pMK33-CFH-BD
Associated Gene/TranscriptMctp-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06302.5prime Sequence

890 bp (889 high quality bases) assembled on 2008-09-15

> FMO06302.5prime
CGTTATCAGTCGACATGTTGGGCAACAGTTGGCCCGGTTGCAAGCGGGCT
CCTCGCATGGTGCTCAAACATGTGAGGCGGCAGCACGAGGAGTTGCGGGA
GCAGCTGGAGCAGGGATGCGACGATCTCATGGAGGTGGCCGAGTCTTATT
TTCCGGATGTCTTGCAGCATTTCCAGCGCAACTCGAAACTGGCTGAGTCA
TCGAAGCGATTGAAGTCACAGATCTGGAGCTCAGTGGTTACCATATTGCT
GGTTAAAGCCAAGGATTTGCCCTTAGCTGAAGATGGCAGCAAGCTGAATG
ATACTCACTTCAAATTCAGATTGGGCAATGAGAAGTACAAGAGCAAGTCT
TCCTGGACGGAACGCTGGCTGGAGCAGTTCGACTTGCACCTGTTTGATGA
AGATCAAAACCTGGAGATCGCACTTTGGAACCGGAACACCCTCTATGGCA
AAGCCATTATTGACCTCAGCGTTTTTCAGCGCGAAAACACGCATGGCATT
TGGAAACCTCTGGAAGATTGCCCTGGTGAGGTCCACCTTATGCTCACTAT
AAGTGGAACCACTGCCTTGGAGACGATCAGCGATCTGAAGGCCTTCAAGG
AGGATCCTCGAGAGGCTCAATTGCTAAGGGAAAGATATAAATTCCTAAGA
TGCCTCCAAAACCTCCGCGATGTGGGTCACCTAACTGTAAAGGTCTTTGG
AGCCACTGGACTGGCTGCAGCGGATATAGGTGGAAAATCCGATCCTTTTT
TGTGTATTGGAACTGGGTAACGCCCGACTGCAAACCCAAACTGAGTATAA
AACACTCACTCCTAATTGGAATAAGATATTTACTTTCAATGTTAAAGACT
CACGCAGGTCCTGGAGATCACCGTTTTCGATGAGGATCGC

FMO06302.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
Mctp-RB 2824 CG15078-RB 109..985 14..890 4340 99.8 Plus
Mctp-RG 4123 CG15078-RG 1561..2284 167..890 3575 99.7 Plus
Mctp-RF 4223 CG15078-RF 1504..2227 167..890 3575 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18771950..18772470 315..836 2560 99.8 Plus
2R 25286936 2R 18771586..18771891 14..319 1530 100 Plus
2R 25286936 2R 18772539..18772593 837..890 225 98.2 Plus
Blast to na_te.dros performed 2014-11-28 21:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
gtwin 7411 gtwin GTWIN 7411bp 1756..1796 244..284 115 75.6 Plus

FMO06302.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:59 Download gff for FMO06302.5prime
Subject Subject Range Query Range Percent Splice Strand
Mctp-RB 109..985 14..890 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:00 Download gff for FMO06302.5prime
Subject Subject Range Query Range Percent Splice Strand
Mctp-RB 98..974 14..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:55 Download gff for FMO06302.5prime
Subject Subject Range Query Range Percent Splice Strand
Mctp-RB 109..985 14..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:55 Download gff for FMO06302.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18771586..18771891 14..319 100 -> Plus
2R 18771955..18772470 320..836 99 -> Plus
2R 18772539..18772593 837..890 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:59 Download gff for FMO06302.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14659460..14659975 320..836 99 -> Plus
arm_2R 14659091..14659396 14..319 100 -> Plus
arm_2R 14660044..14660098 837..890 98   Plus