FMO06304.5prime Sequence
1128 bp (956 high quality bases) assembled on 2008-09-15
> FMO06304.5prime
CAGTCGACATGTACGCAGCTGTTAAACCGCTCTCCAAGTATCTGCAGTTC
AAGTCGGTGCACATCTACGATGCTATTTTCACGCTGCACTCCAAAGTCAC
AGTGGCCCTGCTTTTGGCCTGCACATTTTTGCTTTCCTCGAAACAATATT
TCGGCGATCCCATCCAGTGTTTTGGGGACAAGGATATGGACTACGTGCAC
GCCTTTTGTTGGATCTACGGGGCCTATGTGAGCGACAATGTGACTGTGAC
GCCCCTAAGGAATGGAGCTGCACAGTGCCGACCAGATGCGGTTAGTAAGG
TAGTGCCCCCGGAAAATCGTAACTACATAACCTACTATCAGTGGGTCGTG
CTGGTATTGCTGCTCGAGTCGTTTGTGTTTTATATGCCAGCATTTCTCTG
GAAGATTTGGGAGGGCGGTCGGCTGAAGCATTTGTGCGATGATTTCCACA
AGATGGCCGTTTGCAAGGACAAGAGCAGGACCCATTTGCGCGTACTAGTC
AACTACTTCTCCAGCGATTACAAAGAGACCCACTTCCGCTACTTCGTTAG
CTACGTCTTCTGCGAAATACTCAATTTGAGCATCAGTATTCTAAACTTCC
TTCTGTTGGACGTATTTTTCGGAGGTTTTTGGGGCCGCTACCGTAATGCC
TTGCTGTCCCTTTACAATGGCGACTATAACCAGTGGAACATTATAACCAT
GGCAGTCTTCCCCAAGTGTGCCAAGTGCGAGATGTACAAGGGCGGCCCCA
GCGGTTCTTCCAACATATACGACTACCTTTGCCTGCTGCCCCTGAATATA
CTGAACGAGAAATCTTCGCCTTCCTGTGGATATGGTTTATACTAGTGGCT
ATGCTCATTTCCTCAAGTTTCTGTACCGCCTGCCACGTTTTGTATCCCGG
AATGCGTCTTCAGTTGCTTCGTGCCAGGGCACGTTTTCATGCCCAGAGCA
CTTGCAGGTGGCATTGCGCAATGCAGTTTTGCGACTGGTTCGTGCTGATG
CCCGTAGGCAACAACATCCGCCCCGAGCTATTCCGATAGTGCCTGGAGGA
CTGTAACGATGCTCAGTCCTTGATCAAATAACGCGCAGAGCCGACACATC
GCCAGCTTTTCTAAACAGTTCGCTGGCC
FMO06304.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zpg-RB | 1539 | CG10125-RB | 123..1200 | 8..1078 | 5005 | 98.2 | Plus |
| zpg-RA | 1455 | CG10125-RA | 123..1200 | 8..1078 | 5005 | 98.2 | Plus |
| Inx6-RA | 1875 | CG17063-RA | 270..430 | 9..169 | 190 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6604705..6605202 | 1078..588 | 1875 | 95 | Minus |
| 3L | 28110227 | 3L | 6605275..6605579 | 587..283 | 1525 | 100 | Minus |
| 3L | 28110227 | 3L | 6605633..6605910 | 285..8 | 1390 | 100 | Minus |
| X | 23542271 | X | 20269340..20269500 | 169..9 | 190 | 74.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:43:21 has no hits.
FMO06304.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:53 Download gff for
FMO06304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zpg-RA | 117..1219 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:05 Download gff for
FMO06304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zpg-RA | 114..1216 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:21 Download gff for
FMO06304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zpg-RA | 117..1219 | 1..1096 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:21 Download gff for
FMO06304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6605633..6605913 | 1..285 | 98 | | Minus |
| 3L | 6604686..6605202 | 588..1096 | 95 | <- | Minus |
| 3L | 6605275..6605576 | 286..587 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:53 Download gff for
FMO06304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6597786..6598302 | 588..1096 | 95 | <- | Minus |
| arm_3L | 6598375..6598676 | 286..587 | 100 | <- | Minus |
| arm_3L | 6598733..6599013 | 1..285 | 98 | | Minus |
