FMO06305.5prime Sequence
676 bp (674 high quality bases) assembled on 2008-09-15
> FMO06305.5prime
CAGTCGACATGCATAAACCAAAGCTAGCGAATGCTATAACCGCTGCCGCC
ATTGCCTCATCCATATCCACCAAAAACAACAACAACAACAGCATCGTCGG
CGGCAGCAGCAGCAGCAGCTCCGGTGGCAACAAATCGAAGCGACCACGTC
AGTTTGGCCAATACTCGATCGGAGTTGGAACTGGAGCTGGAGCTGGGGGG
CTACTCCGGTCGGACGACTCCGGCTTCGACCACCTCGACTATTCGTCACT
AATTGGGGATTCGATTGATTTAGAGCACTACATCAGCGCCATGGAGGCAC
GTCGACACGACCAGGAGCCGGATGTTTGGGCCCAGCTGCAGCAGAAGGAG
TCGGACATCCTATTGGCCGCCGAACTGGGCAAGGCACTGCTCGAGAAGAA
CGAGGAGCTGGTCAAACAGCAGGAAAAGCTCATCGAGGACTATTCGAGCA
AAATTGAGAAACTCGAGCAGGAGAAGCATGTGCTGCGCCAAAAATTGGCG
ATCGCCGAGGATGAGAGCGATCAGCGTGTCCTCGAGCTGCAGTCCGATCT
CACCGAGCTGAAGGATAAGCTGCAGACCCAAGACACCGCCATCCCGGCAA
GCGGAGAAGGAGAAGACCATCCTAATTGATGAGCTGCAGCACCAGAACAA
CGGCTCACCGAACAGATCCAGGAGGC
FMO06305.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32137-RB | 3223 | CG32137-RB | 565..1233 | 8..676 | 3300 | 99.7 | Plus |
| CG32137-RA | 2602 | CG32137-RA | 208..612 | 272..676 | 1980 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13941025..13941475 | 8..458 | 2255 | 100 | Plus |
| 3L | 28110227 | 3L | 13959527..13959746 | 457..676 | 1005 | 99.1 | Plus |
Blast to na_te.dros performed 2014-11-28 19:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6888 | 11..132 | 181 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2494 | 38..151 | 175 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1507..1589 | 67..146 | 173 | 71.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2377 | 68..132 | 172 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2389 | 68..132 | 172 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2869 | 24..132 | 169 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6820 | 68..133 | 159 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6841 | 7..133 | 157 | 61.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1144 | 67..152 | 157 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6798 | 68..132 | 154 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2430 | 26..119 | 151 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6709..6777 | 64..132 | 147 | 68.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 10172..10232 | 64..124 | 142 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2659 | 69..132 | 140 | 68.8 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 149..196 | 68..115 | 132 | 75 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9179..9226 | 68..115 | 132 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2463..2527 | 68..132 | 127 | 66.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3251..3358 | 15..120 | 121 | 58.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1113..1154 | 75..116 | 120 | 76.2 | Plus |
| TART-A | 13424 | TART-A 13424bp | 8392..8441 | 68..118 | 117 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6920 | 11..119 | 116 | 58.7 | Plus |
| BS | 5142 | BS BS 5142bp | 2045..2102 | 68..119 | 106 | 69 | Plus |
FMO06305.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:38 Download gff for
FMO06305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32137-RB | 557..1233 | 1..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:52 Download gff for
FMO06305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32137-RB | 554..1230 | 1..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:20 Download gff for
FMO06305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32137-RB | 557..1233 | 1..676 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:20 Download gff for
FMO06305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13941017..13941475 | 1..458 | 99 | -> | Plus |
| 3L | 13959529..13959746 | 459..676 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:38 Download gff for
FMO06305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13934117..13934575 | 1..458 | 99 | -> | Plus |
| arm_3L | 13952629..13952846 | 459..676 | 99 | | Plus |
